X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignmentdb.h;fp=alignmentdb.h;h=a69b917388fcabb052ab453a4c9e8e93e55e3fb6;hb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;hp=d665f788764f6ea228ad70bb99867602820a16c5;hpb=aba5f8811829037b0a3004ef33f0ad4ed5e5fcf8;p=mothur.git

diff --git a/alignmentdb.h b/alignmentdb.h
index d665f78..a69b917 100644
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -21,15 +21,18 @@ class AlignmentDB {
 public:
 
 	AlignmentDB(string, string, int, float, float, float, float);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string);
 	~AlignmentDB();
 	
 	Sequence findClosestSequence(Sequence*);
 	float getSearchScore()  {  return search->getSearchScore();  }
 	int getLongestBase()	{  return longest;  }
+	int MPISend(int);
+	int MPIRecv(int);
 	
 private:
 	int numSeqs, longest;
-	float searchScore;
+	string method;
 	
 	Database* search;
 	vector<Sequence> templateSequences;