X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignmentdb.h;fp=alignmentdb.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=537af8d21548e118a8d7470133be1acd4aab11fb;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/alignmentdb.h b/alignmentdb.h
deleted file mode 100644
index 537af8d..0000000
--- a/alignmentdb.h
+++ /dev/null
@@ -1,44 +0,0 @@
-#ifndef ALIGNMENTDB_H
-#define ALIGNMENTDB_H
-
-/*
- *  alignmentdb.h
- *  Mothur
- *
- *  Created by westcott on 11/4/09.
- *  Copyright 2009 Schloss Lab. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "sequence.hpp"
-#include "database.hpp"
-
-/**************************************************************************************************/
-
-class AlignmentDB {
-
-public:
-
-	AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
-	AlignmentDB(string);
-	~AlignmentDB();
-	
-	Sequence findClosestSequence(Sequence*);
-	float getSearchScore()  {  return search->getSearchScore();  }
-	int getLongestBase()	{  return longest;  }
-	
-private:
-	int numSeqs, longest, threadID;
-	string method;
-	
-	Database* search;
-	vector<Sequence> templateSequences;
-	Sequence emptySequence;
-	MothurOut* m;
-};
-
-/**************************************************************************************************/
-
-#endif
-