X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignmentdb.cpp;h=9fec737778e01704e98f5c813e3c0554e7ab0981;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=4ce76ea487d4c34f9b9a8f5f56658a2352ff7721;hpb=5c5c0428f6d548c28a8b903ac80efed4f92d59db;p=mothur.git

diff --git a/alignmentdb.cpp b/alignmentdb.cpp
index 4ce76ea..9fec737 100644
--- a/alignmentdb.cpp
+++ b/alignmentdb.cpp
@@ -47,7 +47,7 @@ AlignmentDB::AlignmentDB(string fastaFileName, string s, int kmerSize, float gap
 			int start = time(NULL);
 			m->mothurOutEndLine();
 			m->mothurOut("Reading in the " + fastaFileName + " template sequences...\t");	cout.flush();
-			bool aligned = false;
+			//bool aligned = false;
             int tempLength = 0;
             
 			#ifdef USE_MPI