X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignmentdb.cpp;h=4b89acb464ceccc6fd12d68ab717ece3bcb5dbd3;hb=5dc27f45958c8c57c79e85c369121e92d70f9ca5;hp=52eedf80cbdc0991249d9eb6deca30e006d665a8;hpb=e057ab99eca7d45544c83ca6665a042b934b661b;p=mothur.git

diff --git a/alignmentdb.cpp b/alignmentdb.cpp
index 52eedf8..4b89acb 100644
--- a/alignmentdb.cpp
+++ b/alignmentdb.cpp
@@ -17,7 +17,7 @@
 AlignmentDB::AlignmentDB(string fastaFileName, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch){		//	This assumes that the template database is in fasta format, may 
 	try {											//	need to alter this in the future?
 		longest = 0;
-		
+		cout << longest;
 		ifstream fastaFile;
 		openInputFile(fastaFileName, fastaFile);