X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignment.hpp;h=3a2e84de5a8e24cf744ef3544d44df9e3e5dc722;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=9d2197f5eaa7248b9bb8490c87c804f85931d095;hpb=ccf2fedbb600a362777a11501bb56c9c7746068e;p=mothur.git

diff --git a/alignment.hpp b/alignment.hpp
index 9d2197f..3a2e84d 100644
--- a/alignment.hpp
+++ b/alignment.hpp
@@ -25,6 +25,7 @@ public:
 	Alignment();
 	virtual ~Alignment();
 	virtual void align(string, string) = 0;
+    virtual void alignPrimer(string, string) {}
 	
 	
 //	float getAlignmentScore();