X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignment.cpp;h=9ab17004bc146bc97168373995c98b932dcb9c3f;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=0dec2503f3e8db9284158eb2238ce555d155eb93;hpb=e339f9008daa7d37c9a9034829565620a6abe783;p=mothur.git

diff --git a/alignment.cpp b/alignment.cpp
index 0dec250..9ab1700 100644
--- a/alignment.cpp
+++ b/alignment.cpp
@@ -110,6 +110,7 @@ void Alignment::traceBack(){			//	This traceback routine is used by the dynamic
             newBMap[pairwiseLength-spot-1] = it->first-1;
         }
 		BBaseMap = newBMap;
+        
 		for(int i=0;i<seqAaln.length();i++){
 			if(seqAaln[i] != '-' && seqBaln[i] == '-')		{	seqAstart++;	}
 			else if(seqAaln[i] == '-' && seqBaln[i] != '-')	{	seqBstart++;	}