X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignment.cpp;h=235216e8e59c82be596004559445c021312acb40;hb=9489965363593bb2a3e94f801b4079a32ddf8732;hp=d543dbd38c2ef048aa1d536049e91d046a347685;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;p=mothur.git

diff --git a/alignment.cpp b/alignment.cpp
index d543dbd..235216e 100644
--- a/alignment.cpp
+++ b/alignment.cpp
@@ -21,6 +21,7 @@ Alignment::Alignment() {	/*	do nothing	*/	}
 
 Alignment::Alignment(int A) : nCols(A), nRows(A) {
 	try {
+ 
 		m = MothurOut::getInstance();
 		alignment.resize(nRows);			//	For the Gotoh and Needleman-Wunsch we initialize the dynamic programming
 		for(int i=0;i<nRows;i++){			//	matrix by initializing a matrix that is A x A.  By default we will set A