X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=aligncommand.h;h=7eeaa1eb7e7bc3e2dc28d144d646b2190eb34983;hb=36a6b02cf7f09d2bc34376b588944a9ca73429c5;hp=d42369520f127a8ba06c1c86ae9e9929c20f4fac;hpb=dcec3fbce6cb84a97c33f56fa4a41546e3b0e293;p=mothur.git

diff --git a/aligncommand.h b/aligncommand.h
index d423695..7eeaa1e 100644
--- a/aligncommand.h
+++ b/aligncommand.h
@@ -1,6 +1,5 @@
 #ifndef ALIGNCOMMAND_H
 #define ALIGNCOMMAND_H
-
 /*
  *  aligncommand.h
  *  Mothur
@@ -10,7 +9,6 @@
  *
  */
 
-#include "mothur.h"
 #include "command.hpp"
 #include "database.hpp"
 #include "alignment.hpp"
@@ -25,7 +23,7 @@
 #include "nast.hpp"
 #include "nastreport.hpp"
 
-
+//test
 class AlignCommand : public Command {
 	
 public:
@@ -120,7 +118,7 @@ struct alignData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyAlignThreadFunction(LPVOID lpParam){ 
 	alignData* pDataArray;