X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=aligncommand.cpp;h=f9c0436c62874864279e533a3258d72bf2f6cf2d;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=f757a7920bb337883a2a7773f35ed533d2186c80;hpb=4283eb0248ca6e7e3e3344647f16166da0e14147;p=mothur.git

diff --git a/aligncommand.cpp b/aligncommand.cpp
index f757a79..f9c0436 100644
--- a/aligncommand.cpp
+++ b/aligncommand.cpp
@@ -558,7 +558,6 @@ int AlignCommand::driver(linePair* filePos, string alignFName, string reportFNam
 			if (m->control_pressed) {  break; }
 			
 			Sequence* candidateSeq = new Sequence(inFASTA);  m->gobble(inFASTA);
-            cout  << candidateSeq->getAligned() << endl;
 			report.setCandidate(candidateSeq);
 
 			int origNumBases = candidateSeq->getNumBases();