X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=WHAT_IS_NEW;h=6645796d2423bf91107b4d55af9f2a2c17cda372;hb=dbcf1cfb8ad1086c21d64e249f012809403e7ddc;hp=28108dcfac60eb05c39224ee73e09b58b80d3763;hpb=8040543aea04d4af1f444c94489b38e4b4fed49f;p=rsem.git

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 28108dc..6645796 100644
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,3 +1,32 @@
+RSEM v1.2.8
+
+- Provided a more detailed description for how to simulate RNA-Seq data using 'rsem-simulate-reads'
+- Provided more user-friendly error message if RSEM fails to extract transcript sequences due to the failure of reading certain chromosome sequences
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.7
+
+- 'rsem-find-DE' is replaced by 'rsem-run-ebseq' and 'rsem-control-fdr' for a more friendly user experience
+- Added support for differential expression testing on more than 2 conditions in RSEM's EBSeq wrappers 'rsem-run-ebseq' and 'rsem-control-fdr'
+- Renamed '--phred33-quals', '--phred64-quals', and '--solexa-quals' in 'rsem-calculate-expression' to '--bowtie-phred33-quals', '--bowtie-phred64-quals', and '--bowtie-solex-quals' to avoid confusion
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.6
+
+- Install the latest version of EBSeq from Bioconductor and if fails, try to install EBSeq v1.1.5 locally
+- Fixed a bug in 'rsem-gen-transcript-plots', which makes 'rsem-plot-transcript-wiggles' fail 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.5
+
+- Updated EBSeq from v1.1.5 to v1.1.6
+- Fixed a bug in 'rsem-generate-data-matrix', which can cause 'rsem-find-DE' to crash 
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.4
 
 - Fixed a bug that leads to poor parallelization performance in Mac OS systems