X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=WHAT_IS_NEW;h=24ae065d19dc6a56093fba3286d7ff0729a57147;hb=f5dc7f9504136b08210ca8a5f3371060b4c04f60;hp=6645796d2423bf91107b4d55af9f2a2c17cda372;hpb=c5c1142fe4f977cce8799df2470a73064a3f59ba;p=rsem.git

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 6645796..24ae065 100644
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,3 +1,25 @@
+RSEM v1.2.11
+
+- Enabled RSEM to use Bowtie 2 aligner (indel, local and discordant alignments are not supported yet)
+- Changed option names '--bowtie-phred33-quals', '--bowtie-phred64-quals' and '--bowtie-solexa-quals' back to '--phred33-quals', '--phred64-quals' and '--solexa-quals' 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.10
+
+- Fixed a bug which will lead to out-of-memory error when RSEM computes ngvector for EBSeq
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.9
+
+- Fixed a compilation error problem in Mac OS
+- Fixed a problem in makefile that affects 'make ebseq'
+- Added 'model_file_description.txt', which describes the format and meanings of file 'sample_name.stat/sample_name.model'
+- Updated samtools to version 0.1.19
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.8
 
 - Provided a more detailed description for how to simulate RNA-Seq data using 'rsem-simulate-reads'