X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=WHAT_IS_NEW;h=24ae065d19dc6a56093fba3286d7ff0729a57147;hb=f5dc7f9504136b08210ca8a5f3371060b4c04f60;hp=01f9948d2b26dcf11aeb520d084e00c72baf37b3;hpb=93ebadc957ddade1a7cdcf419b48cbb995ac99bc;p=rsem.git

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 01f9948..24ae065 100644
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,8 +1,22 @@
+RSEM v1.2.11
+
+- Enabled RSEM to use Bowtie 2 aligner (indel, local and discordant alignments are not supported yet)
+- Changed option names '--bowtie-phred33-quals', '--bowtie-phred64-quals' and '--bowtie-solexa-quals' back to '--phred33-quals', '--phred64-quals' and '--solexa-quals' 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.10
+
+- Fixed a bug which will lead to out-of-memory error when RSEM computes ngvector for EBSeq
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.9
 
 - Fixed a compilation error problem in Mac OS
 - Fixed a problem in makefile that affects 'make ebseq'
 - Added 'model_file_description.txt', which describes the format and meanings of file 'sample_name.stat/sample_name.model'
+- Updated samtools to version 0.1.19
 
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