X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=WHAT_IS_NEW;h=24ae065d19dc6a56093fba3286d7ff0729a57147;hb=66a1547e5d549a915cefb729222be915b87fb34d;hp=30d927063a3610926219a01c7431e335a41f08a6;hpb=f205fc0144198dee52c71d0d5d6267d9e8880fff;p=rsem.git

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index 30d9270..24ae065 100644
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,3 +1,16 @@
+RSEM v1.2.11
+
+- Enabled RSEM to use Bowtie 2 aligner (indel, local and discordant alignments are not supported yet)
+- Changed option names '--bowtie-phred33-quals', '--bowtie-phred64-quals' and '--bowtie-solexa-quals' back to '--phred33-quals', '--phred64-quals' and '--solexa-quals' 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.2.10
+
+- Fixed a bug which will lead to out-of-memory error when RSEM computes ngvector for EBSeq
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.2.9
 
 - Fixed a compilation error problem in Mac OS