X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=WHAT_IS_NEW;h=09f4dd9c70d44f7f788ea1abd1b44752b02ba204;hb=49deb7291ab1a35a319bdc68a4d4d708ec6f011c;hp=bf8407a435322afe76abf845d1347a149f506816;hpb=3c03759b005d7ca39d65ddf996d8e440ab5aabb6;p=rsem.git

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index bf8407a..09f4dd9 100644
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -2,6 +2,7 @@ RSEM v1.2.7
 
 - 'rsem-find-DE' is replaced by 'rsem-run-ebseq' and 'rsem-control-fdr' for a more friendly user experience
 - Added support for differential expression testing on more than 2 conditions in RSEM's EBSeq wrappers 'rsem-run-ebseq' and 'rsem-control-fdr'
+- Renamed '--phred33-quals', '--phred64-quals', and '--solexa-quals' in 'rsem-calculate-expression' to '--bowtie-phred33-quals', '--bowtie-phred64-quals', and '--bowtie-solex-quals' to avoid confusion
 
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