X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=WHAT_IS_NEW;h=073de14896fce024f5f7938f73ab6806cef47757;hb=613928be32cc58ba330ac30960f4b75440b6d80a;hp=ddcfd959f2accbb06da8a57ef93208aff7a1264d;hpb=4496388fd52d4354c746f36b1998477f31c2b0dd;p=rsem.git

diff --git a/WHAT_IS_NEW b/WHAT_IS_NEW
index ddcfd95..073de14 100644
--- a/WHAT_IS_NEW
+++ b/WHAT_IS_NEW
@@ -1,3 +1,27 @@
+RSEM v1.2.0
+
+- Changed output formats, added FPKM field etc.
+- Fixed a bug related to paired-end reads data
+- Added a script to run EBSeq automatically and updated EBSeq to v1.1.3
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.1.21
+
+- Removed optional field "Z0:A:!" in the BAM outputs
+- Added --no-fractional-weight option to rsem-bam2wig, if the BAM file is not generated by RSEM, this option is recommended to be set
+- Fixed a bug for generating transcript level wiggle files using 'rsem-plot-transcript-wiggles' 
+
+--------------------------------------------------------------------------------------------
+
+RSEM v1.1.20
+
+- Added an option to set the temporary folder name
+- Removed sample_name.sam.gz. Instead, RSEM uses samtools to convert bowtie outputted SAM file into a BAM file under the temporary folder
+- RSEM generated BAM files now contains all alignment lines produced by bowtie or user-specified aligners, including unalignable reads. Please note that for paired-end reads, if one mate has alignments but the other does not, RSEM will mark the alignable mate as "unmappable" (flag bit 0x4) and append an optional field "Z0:A:!"
+
+--------------------------------------------------------------------------------------------
+
 RSEM v1.1.19
 
 - Allowed > 2^31 hits