X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Transcripts.h;fp=Transcripts.h;h=033669b740e97737ce4f5f4bc3a25f016a083910;hb=0f8fbc39759d8a8a4fa755903b8bde403b0da6c9;hp=5c17f95352fcd91ea9e80d8dc5f1559531e2ae09;hpb=c729fa33c6e2f9e3e1b374c66a55265525e7d974;p=rsem.git

diff --git a/Transcripts.h b/Transcripts.h
index 5c17f95..033669b 100644
--- a/Transcripts.h
+++ b/Transcripts.h
@@ -16,7 +16,6 @@
 #include "my_assert.h"
 #include "Transcript.h"
 
-
 class Transcripts {
 public:
 	Transcripts(int type = 0) {
@@ -29,6 +28,14 @@ public:
 
 	int getM() { return M; }
 
+	// used in shrinking the transcripts
+	void setM(int M) { this->M = M; transcripts.resize(M + 1); } 
+	
+	void move(int from, int to) {
+	  assert(from >= to);
+	  if (from > to) transcripts[to] = transcripts[from];
+	}
+	
 	int getType() { return type; }
 	void setType(int type) { this->type = type; }