X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=PackagesWithIssues.txt;h=6bfd60dd121b8059af289b6b5ad837836820c4a2;hb=d4ce54fa9729743502cb3962975105cacde5feb5;hp=9976f5852aaa88df6f8441e38782803bfff6fca2;hpb=3d1d6fa967519aeb750355f7d190fbf33a58fa03;p=cran2deb.git

diff --git a/PackagesWithIssues.txt b/PackagesWithIssues.txt
index 9976f58..6bfd60d 100644
--- a/PackagesWithIssues.txt
+++ b/PackagesWithIssues.txt
@@ -25,18 +25,25 @@ seewave		flac				    	added alias_run,sysreq
 snpXpert	tcltk2					now builds 
 tlnise					tlnise license added
 tsModel		tlnise					now builds					
-SuppDists						build bombs, DESCRIPTION needs space, patch added
 qAnalyst	SuppDists
 survcomp	SuppDists
 BayesTree						added one-line C++ patch 
 HAPim							added one-char DESCRIPTION patch
 MatchIt							added one-line patch
-race							remove debian/ from source tarball -- fixed in cran2deb				
+race							remove debian/ from source tarball -- fixed in cran2deb	
 RJaCGH							contains zlib, added patch to remove it
 seqinr							contains zlib, added patch to remove it
 rSymPy							small patch for python path
+svSocket						small patch re tcl path
+rgrs							xclip sysreq/force added
+RLadyBug						added patch, now works
+dlmap							now works
+TSpadi							now works
+ash					statlib ?
+alphahull						now works
+sgeostat						now works
 
-OPEN ISSUES
+BLACKLISTED 
 ---------------------------------------------------------------------------------
 ADaCGH		tilingArray (BioC)
 DAAGbio		limma (BioC ?)
@@ -44,17 +51,12 @@ metaMA		limma (BioC ?)
 GFMaps		affy (BioC)
 GOSim		GO.db (BioC)
 Metabonomic	PROcess (BioC ?)
-PhViD 		LBE ????
-RLadyBug						added small patch, still fails ??
-Rsymphony						build bombs, patch ?, Debian build
+PhViD 		LBE (BioC)
 SNPMaP		affxparser, SNPMaP.cdm (BioC)						
 SubpathwayMiner KEGG.db (BioC)
 gene2pathway    KEGG.db (BioC)
-TSpadi							build bombs on i386 but not amd64, wild linking ?
-alphahull	removed ?
-ash					statlib ?
 bayesCGH	snapCGH (BioC ?)
-classGraoh	Rgraphviz (BioC ?)			
+classGraph	Rgraphviz (BioC ?)			
 gcExplorer	Rgraphviz (BioC ?)											
 logilasso	Rgraphviz (BioC ?)
 pcalg		Rgraphviz (BioC ?)
@@ -62,19 +64,13 @@ qdg		pcalg -> Rgraphviz
 celsius		BioBase (BioC ?)
 multtest	BioBase (BioC ?)
 hopach		BioBase (BioC ?)
-multtest	BioBase (BioC ?)
 GExMap		multtest (BioC)
 LMGene		multtest (BioC)
+PCS		multtest (BioC)
 crosshybDetector marray (disappread ?)
-dlmap		empty DESCRIPTION ?
-fPortfolio	RSymphony (which will be in Debian)
-lsa		Rstem ?
+lsa		Rstem 
 mpm		geneplotter (BioC ?)
-mvgraph		statDA ?
-sabreR							contains binary, lintian override ?
-sgeostat	license ? package `5gone ?
 sisus		annotate, Biobase (BioC ?)
-svSocket						small patch re tcl path
 
 REJECTED
 ---------------------------------------------------------------------------------------------
@@ -117,6 +113,7 @@ rankreg					non-profit
 rngwell19937				non-commercial
 spatialkernel				gpc library in non-commercial
 
+
 CANNOT BUILD
 ----------------------------------------------------------------------------------------------
 CarbonEL						Mac OS X only
@@ -128,10 +125,18 @@ Rsge							SGE required
 VhayuR							Vhauy required
 gputools						nvcc (>= 2.1)						
 klar							svmlight (non-commercial)
-rgrs							xclip
 rimage							C++ needs g++ 4.* update
+sabreR							contains binary, lintian override ?
 svGUI							komodo
 wgaim							asreml-r
 xgobi							Xgobi
 
 TODO:
+---------------------------------------------------------------------------------
+aroma.apd						requires aroma.light from BioC
+aroma.core						requires aroma.light from BioC
+IDPmisc							broken R file (!!)
+Rsymphony						build bombs, patch ?, Debian build exists
+SuppDists						build bombs, DESCRIPTION needs space, patch added
+cmprskContin						fortan95 compiler wants memory model
+mvgraph		statDA ?				need pkg-config ?