X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=f6acbff8297c3c3756acc8ec24a2db1115399c7d;hb=a2fc961dffe9f9b7994ed880e68c03b2334dc341;hp=442534831a83410208674241b0d5746377ef726e;hpb=12b407de3b6d3a160eb2ebd48d005da328735206;p=ape.git

diff --git a/NEWS b/NEWS
index 4425348..f6acbff 100644
--- a/NEWS
+++ b/NEWS
@@ -3,14 +3,31 @@
 
 NEW FEATURES
 
+    o The new function 'where' searches patterns in DNA sequences.
+
     o pic() gains an option 'rescaled.tree = FALSE' to return the tree
-      with its branch lengths rescaled for the PICs calculation.
+      with its branch lengths rescaled for the PIC calculation.
+
+    o clustal(), muscle(), and tcoffee() gain an option
+      'original.ordering = TRUE' to ease the comparisons of
+      alignments.
+
+    o plot.phylo() has a new option, open.angle, used when plotting
+      circular trees.
 
 
 BUG FIXES
 
     o drop.tip() shuffled node labels on some trees.
 
+    o axisPhylo() now works correctly with circular trees, and gives a
+      sensible error message when type = "r" or "u".
+
+
+OTHER CHANGES
+
+    o .compressTipLabel() is 10 times faster thanks to Joseph Brown.
+
 
 
 		CHANGES IN APE VERSION 3.0-6