X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=ec8918ae97f2c4e7d9bfe7e8a7d19fc2a6599041;hb=4302b11b3ae487613d8f9480dfb86a840087b343;hp=e4235a9a0cf397de73f5f19215f6401525e98f96;hpb=bb212c8b0bb52b72923c0e9a6ec942b81c681a38;p=ape.git

diff --git a/NEWS b/NEWS
index e4235a9..ec8918a 100644
--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,16 @@
+		CHANGES IN APE VERSION 3.0-5
+
+
+OTHER CHANGES
+
+    o write.dna(format = "fasta") now conforms more closely to the
+      FASTA standard thanks to François Michonneau.
+
+    o print.DNAbin() does not print base compositions if there are more
+      than one million nucleotides.
+
+
+
 		CHANGES IN APE VERSION 3.0-4
 
 
@@ -7,8 +20,7 @@ BUG FIXES
       tabulations instead of white spaces.
 
     o read.dna() failed to read Phylip or Clustal files with less than
-      10 nucleotides failed. (See other changes in this function
-      below.)
+      10 nucleotides. (See other changes in this function below.)
 
 OTHER CHANGES
 
@@ -16,6 +28,8 @@ OTHER CHANGES
       taxa names and the sequences (whatever the length of taxa
       names). write.dna() now follows the same rule.
 
+    o The option 'seq.names' of read.dna has been removed.
+
     o The files ape-defunct.R and ape-defunct.Rd, which have not been
       modified for almost two years, have been removed.