X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=e90cec15c61f7d4d1bae3e76033142edcfac8b3d;hb=2014b83971be4b9cd1644d6127837df798e9335c;hp=729e3ed930e14e4404d261978374069c41576c6c;hpb=b9e04a6e6af3beda74b916eda00b42ac38875563;p=ape.git diff --git a/NEWS b/NEWS index 729e3ed..e90cec1 100644 --- a/NEWS +++ b/NEWS @@ -7,10 +7,9 @@ NEW FEATURES index.only = TRUE to return only the vector of indices (the tree is unmodified, see ?reorder.phylo for details). - o The three new functions node.depth.length, node.height, and + o The three new functions node.depth.edgelength, node.height, and node.height.clado make some internal code available from R. See - ?node.depth (which was already available and documented) for - details. + ?node.depth (which was already documented) for details. BUG FIXES @@ -18,6 +17,16 @@ BUG FIXES o reorder(, "pruningwise") made R crash if the rows of the edge matrix are in random order: this is now fixed. + o drop.tip() sometimes shuffled node labels (thanks to Rebecca + Best for the report). + + o drop.tip(phy, "") returned a tree with zero-length tip labels: + it now returns the tree unchanged (thanks to Brian Anacker for + the report). + + o plot.phylo() made R crash if the tree has zero-length tip + labels: it now returns NULL (thanks again to Brian Anacker). + OTHER CHANGES