X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=9bc3f6c8c56effb85d22da07d4d5fed2f086ee8d;hb=0eea4e45fea5cbcd63d5b257578579d52970d68c;hp=6ca4ae5ac27602474b382f7c026c3d1a533c008e;hpb=dc2dda7eb763b4e140f1e5adb7fa8bfaa2661f6d;p=ape.git diff --git a/NEWS b/NEWS index 6ca4ae5..9bc3f6c 100644 --- a/NEWS +++ b/NEWS @@ -1,3 +1,27 @@ + CHANGES IN APE VERSION 3.0-8 + + +NEW FEATURES + + o ace() gains a new option 'use.expm' to use expm() from the + package of the same name in place of matexpo(). + + +BUG FIXES + + o read.dna(, "fasta") may add '\r' in labels: this is fixed. + + o prop.clades() returned wrong numbers when the tip labels of + 'phy' are not in the same order than the list of trees (thanks + to Rupert Collins for the report). + + o CADM.post() displayed "1" on the diagonal of the matrix of + Mantel p-values. It now displays "NA" on the diagonal, + indicating that no test of significance is computed between a + distance matrix and itself. + + + CHANGES IN APE VERSION 3.0-7