X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=55d0adc836df886582039bfc36a8f2d039694ada;hb=1ad48c7a70983375138a6500372db588c8a3a134;hp=776fd4ae533120c384bbe3cfca87a8bbac66b698;hpb=7af63afb401f7cc82816b0af19e21c43fab49674;p=ape.git

diff --git a/NEWS b/NEWS
index 776fd4a..55d0adc 100644
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+++ b/NEWS
@@ -1,15 +1,63 @@
+		CHANGES IN APE VERSION 3.0
+
+
+NEW FEATURES
+
+    o plot.phylo() has a new option 'rotate.tree' to rotate unrooted,
+      fan or radial trees around the center of the plot.
+
+
+BUG FIXES
+
+    o mantel.test() could return P-values > 1 with the default
+      two-tailed test.
+
+    o extract.clade() sometimes shuffled some tip labels (thanks to
+      Ludovic Mallet and Mahendra Mariadassou for the fix).
+
+    o clustal() should now by default find the executable under Windows.
+
+
+OTHER CHANGES
+
+    o The code of yule() has been simplified and is now much faster for
+      big trees.
+
+    o The code of mantel.test() has been adjusted to be consistent
+      with common permutation tests.
+
+    o The C code of base.freq() has been improved and is now nearly 8
+      times faster.
+
+
+
 		CHANGES IN APE VERSION 2.8
 
 
 NEW FEATURES
 
+    o Twelve new functions have been written by Andrei-Alin Popescu:
+      additive, ultrametric, is.compatible, arecompatible, mvr, mvrs,
+      njs, bionjs, SDM, treePop, triangMtd, triangMtd*.
+
+    o A new class "bitsplits" has been created by Andrei-Alin Popescu
+      to code splits (aka, bipartition).
+
+    o There is a new generic function as.bitsplits with a method to
+      convert from the class "prop.part" to the class "bitsplits".
+
+    o The new function ltt.coplot plots on the same scales a tree and
+      the derived LTT plot.
+
     o ltt.plot() has two new options: backward and tol. It can now
       handle non-ultrametic trees and its internal coding has been
       improved. The coordinates of the plot can now be computed with
       the new function ltt.plot.coords.
 
-    o The new function ltt.coplot plots on the same scales a tree and
-      its LTT plot.
+
+BUG FIXES
+
+    o prop.part() crashed if some trees had some multichotomies.