X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=55d0adc836df886582039bfc36a8f2d039694ada;hb=1ad48c7a70983375138a6500372db588c8a3a134;hp=39b3905d1c4262bba55feec7f7fcf65f471c5ca6;hpb=a02ce8c6e9fd80d3d7a749cc24699366fb8e54b6;p=ape.git diff --git a/NEWS b/NEWS index 39b3905..55d0adc 100644 --- a/NEWS +++ b/NEWS @@ -1,4 +1,10 @@ - CHANGES IN APE VERSION 2.8-1 + CHANGES IN APE VERSION 3.0 + + +NEW FEATURES + + o plot.phylo() has a new option 'rotate.tree' to rotate unrooted, + fan or radial trees around the center of the plot. BUG FIXES @@ -6,12 +12,23 @@ BUG FIXES o mantel.test() could return P-values > 1 with the default two-tailed test. + o extract.clade() sometimes shuffled some tip labels (thanks to + Ludovic Mallet and Mahendra Mariadassou for the fix). + + o clustal() should now by default find the executable under Windows. + OTHER CHANGES o The code of yule() has been simplified and is now much faster for big trees. + o The code of mantel.test() has been adjusted to be consistent + with common permutation tests. + + o The C code of base.freq() has been improved and is now nearly 8 + times faster. + CHANGES IN APE VERSION 2.8