X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=46af03fc06ef1fcf9e8a61d37760c26251265397;hb=fb6a06e39b9c580b39c76fd95e950144e818f45d;hp=12aabcc184d0d156963862a6206b735260ff5131;hpb=eccd02caa284c933ccabf54c2b52d2c871cbd8e8;p=ape.git diff --git a/NEWS b/NEWS index 12aabcc..46af03f 100644 --- a/NEWS +++ b/NEWS @@ -1,10 +1,27 @@ CHANGES IN APE VERSION 3.0-6 +NEW FEATURES + + o reorder.phylo() has a new order, "postorder", and a new option + index.only = TRUE to return only the vector of indices (the tree + is unmodified; see ?reorder.phylo for details). + + +BUG FIXES + + o reorder(, "pruningwise") made R crash if the rows of the edge + matrix are in random order. + + OTHER CHANGES o dist.nodes() is now 6 to 10 times faster. + o reorder(, "cladewise") is now faster. The change is not very + visible for small trees (n < 1000) but this can be more than + 1000 faster for big trees (n >= 1e4). + CHANGES IN APE VERSION 3.0-5