X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=46af03fc06ef1fcf9e8a61d37760c26251265397;hb=22bfb51d0260544b61b4bdfbd8e039d52b540617;hp=1c1ae9cab6573ea0ce243036ada8d6b38b25b11c;hpb=60df2f5f6de3e33d17489ebc271b585375a42303;p=ape.git diff --git a/NEWS b/NEWS index 1c1ae9c..46af03f 100644 --- a/NEWS +++ b/NEWS @@ -1,3 +1,29 @@ + CHANGES IN APE VERSION 3.0-6 + + +NEW FEATURES + + o reorder.phylo() has a new order, "postorder", and a new option + index.only = TRUE to return only the vector of indices (the tree + is unmodified; see ?reorder.phylo for details). + + +BUG FIXES + + o reorder(, "pruningwise") made R crash if the rows of the edge + matrix are in random order. + + +OTHER CHANGES + + o dist.nodes() is now 6 to 10 times faster. + + o reorder(, "cladewise") is now faster. The change is not very + visible for small trees (n < 1000) but this can be more than + 1000 faster for big trees (n >= 1e4). + + + CHANGES IN APE VERSION 3.0-5