X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=2a2601eed63c5c5303ef39cc0153505399129d6a;hb=6ee9e0a4e1e6bbc09187382bfdef57fafe3844c7;hp=0bc534026eecdbe12c860c5507e8d876af52e79c;hpb=2e7fdb027f189e7c8eb771dadaf195c43bd41d5f;p=ape.git

diff --git a/NEWS b/NEWS
index 0bc5340..2a2601e 100644
--- a/NEWS
+++ b/NEWS
@@ -3,7 +3,19 @@
 
 NEW FEATURES
 
-    o There is a new predict() method for compar.gee().
+    o mantel.test() has a new argument 'alternative' which is
+      "two-sided" by default. Previously, this test was one-tailed
+      with no possibility to change.
+
+
+BUG FIXES
+
+    o Branch lengths were wrongly updated with bind.tree(, where = <tip>,
+      position = 0). (Thanks to Liam Revell for digging this bug out.)
+
+    o Simulation of OU process with rTraitCont() did not work correctly.
+      This now uses formula from Gillespie (1996) reduced to a BM
+      process when alpha = 0 avoiding division by zero.
 
 
 
@@ -17,6 +29,9 @@ NEW FEATURES
       and four conversion methods to the classes "phylo", "networx",
       "network", and "igraph".
 
+    o The new function rTraitMult does multivariate traits simulation
+      with user-defined models.
+
     o plot.phylo() has a new option 'plot = TRUE'. If FALSE, the tree
       is not plotted but the graphical device is set and the
       coordinates are saved as usual.
@@ -30,6 +45,8 @@ NEW FEATURES
     o boot.phylo() now displays a progress bar by default (can be off
       if 'quiet = TRUE').
 
+    o There is a new predict() method for compar.gee().
+
 
 BUG FIXES
 
@@ -44,6 +61,12 @@ BUG FIXES
       presence of identical or nearly identical sequences.
 
 
+OTHER CHANGES
+
+    o The data bird.families, bird.orders, cynipids, and woodmouse are
+      now provided as .rda files.
+
+
 
 		CHANGES IN APE VERSION 2.7-1