X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=28d6aaa81269b72f0b8cb26a971c5bd55e33c050;hb=aecbff7298d7df0ac206fc5c45aa91d758c1b502;hp=70b41c3247d2545c3e6423b5e7c9abd59423644e;hpb=3f948da333af4c84b03155085c1ee55db8d0a49f;p=samtools.git diff --git a/NEWS b/NEWS index 70b41c3..28d6aaa 100644 --- a/NEWS +++ b/NEWS @@ -1,5 +1,5 @@ -Beta Release 0.1.8 (?) -~~~~~~~~~~~~~~~~~~~~~~ +Beta Release 0.1.8 (11 July, 2010) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Notable functional changes: @@ -22,6 +22,9 @@ Notable functional changes: * The `tview' command now correctly handles CIGARs like 7I10M and 10M1P1I10M which cause assertion failure in earlier versions. + * Tview accepts a region like `=10,000' where `=' stands for the + current sequence name. This saves typing for long sequence names. + * Added the `-d' option to `pileup' which avoids slow indel calling in ultradeep regions by subsampling reads locally. @@ -48,6 +51,8 @@ Bug fixes: * Fixed another issue in the indel caller which may lead to incorrect genotype. + * Fixed a bug in `sort' when option `-o' is applied. + * Fixed a bug in `view -r'. APIs and other changes: @@ -68,7 +73,7 @@ Changes in other utilities: * Added a Python version of varfilter.py by Aylwyn Scally. -(0.1.8: ?) +(0.1.8: 11 July 2010, r613)