X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NEWS;h=0bc534026eecdbe12c860c5507e8d876af52e79c;hb=2e7fdb027f189e7c8eb771dadaf195c43bd41d5f;hp=f80ec46d3747d4324a65594c83a0a90007da4800;hpb=29792fb8cef8ddab4553474398369fb6c24c1d8b;p=ape.git

diff --git a/NEWS b/NEWS
index f80ec46..0bc5340 100644
--- a/NEWS
+++ b/NEWS
@@ -1,9 +1,23 @@
+		CHANGES IN APE VERSION 2.7-3
+
+
+NEW FEATURES
+
+    o There is a new predict() method for compar.gee().
+
+
+
 		CHANGES IN APE VERSION 2.7-2
 
 
 NEW FEATURES
 
-    o plot.phylo() has a new option 'draw = TRUE'. If FALSE, the tree
+    o There is a new class "evonet" to code evolutionary networks, with
+      a constructor function evonet(), a print() and a plot() methods,
+      and four conversion methods to the classes "phylo", "networx",
+      "network", and "igraph".
+
+    o plot.phylo() has a new option 'plot = TRUE'. If FALSE, the tree
       is not plotted but the graphical device is set and the
       coordinates are saved as usual.
 
@@ -13,6 +27,9 @@ NEW FEATURES
     o add.scale.bar() has two new options, 'lwd' and 'lcol', to modify
       the aspect of the bar.
 
+    o boot.phylo() now displays a progress bar by default (can be off
+      if 'quiet = TRUE').
+
 
 BUG FIXES
 
@@ -23,6 +40,9 @@ BUG FIXES
 
     o read.nexus.data() failed with URLs.
 
+    o boot.phylo() returned overestimated support values in the
+      presence of identical or nearly identical sequences.
+
 
 
 		CHANGES IN APE VERSION 2.7-1