X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=NAMESPACE;h=08f08996e6a84b74d053c6a599df7b790300b02a;hb=646d8be3497d656d95331e2c7f6bef5d2ff86b2c;hp=18ed656695aad2e6021e9dea95ced3255d94fc9e;hpb=f3426364b40c7c0e6aadf6ea2690716425abdfc9;p=ape.git

diff --git a/NAMESPACE b/NAMESPACE
index 18ed656..08f0899 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -1,12 +1,15 @@
 useDynLib(ape)
 
-export(as.DNAbin, as.phylo, base.freq, dist.dna, dist.nodes, drop.tip, ltt.plot, nj, rcoal, rtree, rmtree, read.dna, read.nexus, read.tree, vcv.phylo, write.dna, write.nexus, write.tree)
+exportPattern(".+")
 
 import(gee, nlme)
 importFrom(lattice, xyplot, panel.lines, panel.points)
+importFrom(stats, as.hclust, cophenetic, reorder)
+importFrom(expm, expm)
 
 S3method(print, phylo)
 S3method(plot, phylo)
+S3method(cophenetic, phylo)
 S3method(as.hclust, phylo)
 S3method(reorder, phylo)
 S3method(print, multiPhylo)
@@ -19,5 +22,6 @@ S3method(print, DNAbin)
 S3method(cbind, DNAbin)
 S3method(rbind, DNAbin)
 S3method("[", DNAbin)
-S3method(summary, DNAbin)
+S3method(labels, DNAbin)
 S3method(as.character, DNAbin)
+S3method(as.matrix, DNAbin)