X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=e186189747863ade7244de0831b853ba99774017;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hp=284bb592f407196ae05100feb4f0c45160e68027;hpb=4a760c2d164aa955dee7d3d38da323822763d906;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 284bb59..e186189 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -20,6 +20,7 @@ A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; }; A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; }; A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; }; + A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */ = 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lastKnownFileType = sourcecode.c.h; lineEnding = 0; path = decalc.h; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.objcpp; }; A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = ""; }; A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = ""; }; A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = degapseqscommand.cpp; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.cpp; }; @@ -725,7 +749,7 @@ A7E9B71812D37EC400DA6239 /* hcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hcluster.cpp; sourceTree = SOURCE_ROOT; }; A7E9B71912D37EC400DA6239 /* 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fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = SOURCE_ROOT; }; A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = ""; }; @@ -1131,6 +1155,8 @@ A7A61F1A130035C800E05B6B /* LICENSE */, A70332B512D3A13400761E33 /* makefile */, A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */, + A77B718A173D40E4002163C2 /* calcsparcc.h */, + A77B7189173D40E4002163C2 /* calcsparcc.cpp */, A7E9BA4F12D398D700DA6239 /* clearcut */, A7E9B69812D37EC400DA6239 /* cluster.cpp */, A7E9B69912D37EC400DA6239 /* cluster.hpp */, @@ -1176,6 +1202,8 @@ A7E9B73A12D37EC400DA6239 /* libshuff.h */, A7FC480C12D788F20055BC5C /* linearalgebra.h */, A7FC480D12D788F20055BC5C /* linearalgebra.cpp */, + A7D9378B17B15215001E90B0 /* wilcox.h */, + A7D9378917B146B5001E90B0 /* wilcox.cpp */, A7E9BA5612D39BD800DA6239 /* metastats */, A7E9B75B12D37EC400DA6239 /* mothur.cpp */, A7E9B75C12D37EC400DA6239 /* mothur.h */, @@ -1200,6 +1228,8 @@ A7E9B79C12D37EC400DA6239 /* progress.hpp */, A7548FAF171440ED00B1F05A /* qFinderDMM.h */, A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */, + A77B7187173D4041002163C2 /* randomnumber.h */, + A77B7186173D4041002163C2 /* randomnumber.cpp */, A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */, A7386C191619C9FB00651424 /* randomforest */, A7E9B7A612D37EC400DA6239 /* rarecalc.h */, @@ -1248,8 +1278,6 @@ children = ( A7386C1B1619CACB00651424 /* abstractdecisiontree.hpp */, A7386C241619E52200651424 /* abstractdecisiontree.cpp */, - A7386C1C1619CACB00651424 /* abstractrandomforest.hpp */, - A7386C26161A0F9C00651424 /* abstractrandomforest.cpp */, A7386C1D1619CACB00651424 /* decisiontree.hpp */, A7386C28161A110700651424 /* decisiontree.cpp */, A7386C1E1619CACB00651424 /* macros.h */, @@ -1385,8 +1413,6 @@ A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, - A70056E8156A93E300924A2D /* getotulabelscommand.h */, - A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */, A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */, @@ -1395,6 +1421,8 @@ A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */, A7E9B70112D37EC400DA6239 /* getotuscommand.h */, A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */, + A70056E8156A93E300924A2D /* getotulabelscommand.h */, + A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B70312D37EC400DA6239 /* getrabundcommand.h */, A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */, A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */, @@ -1419,6 +1447,8 @@ A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */, A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */, A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */, + A7190B211768E0DF00A9AFA6 /* lefsecommand.h */, + A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */, A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */, A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */, A7A0671C156294810095C8C5 /* listotulabelscommand.h */, @@ -1437,6 +1467,10 @@ A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */, A7E9B74412D37EC400DA6239 /* makegroupcommand.h */, A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */, + A741744B175CD9B1007DF49B /* makelefsecommand.h */, + A741744A175CD9B1007DF49B /* makelefsecommand.cpp */, + A7E6F69C17427CF2006775E2 /* makelookupcommand.h */, + A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */, A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */, A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */, A7E9B75412D37EC400DA6239 /* mergefilecommand.h */, @@ -1503,6 +1537,8 @@ A727864312E9E28C00F86ABA /* removerarecommand.cpp */, A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */, A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */, + A7CFA42F1755400500D9ED4D /* renameseqscommand.h */, + A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */, A7E9B7CE12D37EC400DA6239 /* reversecommand.h */, A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */, A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */, @@ -1533,6 +1569,8 @@ A774101314695AF60098E6AC /* shhhseqscommand.cpp */, A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */, A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */, + A77B7183173D222F002163C2 /* sparcccommand.h */, + A77B7184173D2240002163C2 /* sparcccommand.cpp */, A7E9B84012D37EC400DA6239 /* splitabundcommand.h */, A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */, A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */, @@ -1743,6 +1781,8 @@ A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, + A77916E7176F7F7600EEFE18 /* designmap.h */, + A77916E6176F7F7600EEFE18 /* designmap.cpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, @@ -2326,7 +2366,6 @@ A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */, A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */, A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */, - A7386C27161A0F9D00651424 /* abstractrandomforest.cpp in Sources */, A7386C29161A110800651424 /* decisiontree.cpp in Sources */, A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */, A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */, @@ -2346,6 +2385,15 @@ A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */, A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */, A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */, + A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */, + A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */, + A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */, + A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */, + A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */, + A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */, + A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */, + A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */, + A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2395,11 +2443,11 @@ GCC_ENABLE_SSE3_EXTENSIONS = NO; GCC_ENABLE_SSE41_EXTENSIONS = NO; GCC_ENABLE_SSE42_EXTENSIONS = NO; - GCC_OPTIMIZATION_LEVEL = 3; + GCC_OPTIMIZATION_LEVEL = s; GCC_PREPROCESSOR_DEFINITIONS = ( "MOTHUR_FILES=\"\\\"../../release\\\"\"", - "VERSION=\"\\\"1.29.2\\\"\"", - "RELEASE_DATE=\"\\\"2/12/2013\\\"\"", + "VERSION=\"\\\"1.31.0\\\"\"", + "RELEASE_DATE=\"\\\"5/24/2013\\\"\"", ); "GCC_VERSION[arch=*]" = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; @@ -2432,10 +2480,10 @@ GCC_C_LANGUAGE_STANDARD = gnu99; GCC_GENERATE_DEBUGGING_SYMBOLS = NO; GCC_MODEL_TUNING = ""; - GCC_OPTIMIZATION_LEVEL = 3; + GCC_OPTIMIZATION_LEVEL = s; GCC_PREPROCESSOR_DEFINITIONS = ( - "VERSION=\"\\\"1.30.0\\\"\"", - "RELEASE_DATE=\"\\\"4/01/2013\\\"\"", + "VERSION=\"\\\"1.31.0\\\"\"", + "RELEASE_DATE=\"\\\"5/24/2013\\\"\"", ); GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES;