X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=c5ea99c15518788ae1d70defa1a74ae2d0f13433;hb=5eb72762d405db2dd83c2ec8a5d5c2eb57800ca3;hp=df58a36026bed6961481c3e31efeccf6a8086810;hpb=9b53f130ac9af5e95444ce2e817fce25ed19ff03;p=mothur.git

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index df58a36..c5ea99c 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -10,6 +10,9 @@
 		219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; };
 		219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; };
 		7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; };
+		834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */; };
+		834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */; };
+		83F25B0C163B031200ABE73D /* forest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 83F25B0A163B031200ABE73D /* forest.cpp */; };
 		8DD76FB00486AB0100D96B5E /* mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6A0FF2C0290799A04C91782 /* mothur.1 */; };
 		A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotulabelscommand.cpp */; };
 		A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; };
@@ -384,6 +387,12 @@
 		7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = refchimeratest.h; sourceTree = "<group>"; };
 		7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = refchimeratest.cpp; sourceTree = "<group>"; };
 		7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapdistignorens.h; sourceTree = "<group>"; };
+		834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = regularizedrandomforest.cpp; sourceTree = "<group>"; };
+		834D9D571656D7C400E7FAB9 /* regularizedrandomforest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = regularizedrandomforest.h; sourceTree = "<group>"; };
+		834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = regularizeddecisiontree.cpp; sourceTree = "<group>"; };
+		834D9D5B1656DEC700E7FAB9 /* regularizeddecisiontree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = regularizeddecisiontree.h; sourceTree = "<group>"; };
+		83F25B0A163B031200ABE73D /* forest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = forest.cpp; sourceTree = "<group>"; };
+		83F25B0B163B031200ABE73D /* forest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = forest.h; sourceTree = "<group>"; };
 		8DD76FB20486AB0100D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
 		A70056E5156A93D000924A2D /* getotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getotulabelscommand.cpp; sourceTree = "<group>"; };
 		A70056E8156A93E300924A2D /* getotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getotulabelscommand.h; sourceTree = "<group>"; };
@@ -1222,6 +1231,12 @@
 				A77E1937161B201E00DB1A2A /* randomforest.cpp */,
 				A7386C201619CACB00651424 /* rftreenode.hpp */,
 				A77E193A161B289600DB1A2A /* rftreenode.cpp */,
+				83F25B0A163B031200ABE73D /* forest.cpp */,
+				83F25B0B163B031200ABE73D /* forest.h */,
+				834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */,
+				834D9D571656D7C400E7FAB9 /* regularizedrandomforest.h */,
+				834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */,
+				834D9D5B1656DEC700E7FAB9 /* regularizeddecisiontree.h */,
 			);
 			name = randomforest;
 			sourceTree = "<group>";
@@ -2280,6 +2295,9 @@
 				A721AB71161C572A009860A1 /* kmernode.cpp in Sources */,
 				A721AB72161C572A009860A1 /* kmertree.cpp in Sources */,
 				A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */,
+				83F25B0C163B031200ABE73D /* forest.cpp in Sources */,
+				834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */,
+				834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
@@ -2331,8 +2349,8 @@
 				GCC_OPTIMIZATION_LEVEL = 3;
 				GCC_PREPROCESSOR_DEFINITIONS = (
 					"MOTHUR_FILES=\"\\\"../release\\\"\"",
-					"VERSION=\"\\\"1.26.0\\\"\"",
-					"RELEASE_DATE=\"\\\"7/9/2012\\\"\"",
+					"VERSION=\"\\\"1.28.0\\\"\"",
+					"RELEASE_DATE=\"\\\"11/2/2012\\\"\"",
 				);
 				"GCC_VERSION[arch=*]" = "";
 				GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
@@ -2367,8 +2385,8 @@
 				GCC_MODEL_TUNING = "";
 				GCC_OPTIMIZATION_LEVEL = 3;
 				GCC_PREPROCESSOR_DEFINITIONS = (
-					"VERSION=\"\\\"1.27.0\\\"\"",
-					"RELEASE_DATE=\"\\\"8/8/2012\\\"\"",
+					"VERSION=\"\\\"1.28.0\\\"\"",
+					"RELEASE_DATE=\"\\\"11/2/2012\\\"\"",
 				);
 				GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
 				GCC_WARN_ABOUT_RETURN_TYPE = YES;