X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=b95f673d028e793f407897a9028392403939cda0;hb=0bcfddf7bc721a334bdae42d86a580019303537d;hp=c3a3d004db9edc34c71c48f469aba1e67e772f47;hpb=ea34218a94af7cb96d4a1b44e444a87c7ab7456c;p=mothur.git

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index c3a3d00..b95f673 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -14,6 +14,8 @@
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 		A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
+		A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
+		A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; };
 		A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; };
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 		A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
@@ -286,6 +288,7 @@
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 		A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
+		A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FA10011302E096003860FE /* mantelcommand.cpp */; };
 		A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC480D12D788F20055BC5C /* linearalgebra.cpp */; };
 		A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC486612D795D60055BC5C /* pcacommand.cpp */; };
 /* End PBXBuildFile section */
@@ -316,6 +319,10 @@
 		A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergegroupscommand.cpp; sourceTree = "<group>"; };
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 		A727864312E9E28C00F86ABA /* removerarecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removerarecommand.cpp; sourceTree = "<group>"; };
+		A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = homovacommand.h; sourceTree = "<group>"; };
+		A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = homovacommand.cpp; sourceTree = "<group>"; };
+		A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makefastqcommand.h; sourceTree = "<group>"; };
+		A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = "<group>"; };
 		A7A61F1A130035C800E05B6B /* LICENSE */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = LICENSE; sourceTree = "<group>"; };
 		A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = amovacommand.h; sourceTree = "<group>"; };
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@@ -881,6 +888,8 @@
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+		A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = "<group>"; };
+		A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mantelcommand.cpp; sourceTree = "<group>"; };
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 		A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
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@@ -1112,12 +1121,18 @@
 				A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */,
 				A7E9B72812D37EC400DA6239 /* helpcommand.cpp */,
 				A7E9B72912D37EC400DA6239 /* helpcommand.h */,
+				A75790571301749D00A30DAB /* homovacommand.h */,
+				A75790581301749D00A30DAB /* homovacommand.cpp */,
 				A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
 				A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */,
 				A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
 				A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
 				A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */,
 				A7E9B73E12D37EC400DA6239 /* listseqscommand.h */,
+				A7FA10001302E096003860FE /* mantelcommand.h */,
+				A7FA10011302E096003860FE /* mantelcommand.cpp */,
+				A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */,
+				A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
 				A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
 				A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
 				A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */,
@@ -1605,7 +1620,7 @@
 			attributes = {
 				ORGANIZATIONNAME = "Schloss Lab";
 			};
-			buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "mothur" */;
+			buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
 			compatibilityVersion = "Xcode 3.1";
 			developmentRegion = English;
 			hasScannedForEncodings = 1;
@@ -1909,6 +1924,9 @@
 				A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */,
 				7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */,
 				A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */,
+				A75790591301749D00A30DAB /* homovacommand.cpp in Sources */,
+				A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */,
+				A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
@@ -2024,7 +2042,7 @@
 			defaultConfigurationIsVisible = 0;
 			defaultConfigurationName = Release;
 		};
-		1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "mothur" */ = {
+		1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
 			isa = XCConfigurationList;
 			buildConfigurations = (
 				1DEB928A08733DD80010E9CD /* Debug */,