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PBXFrameworksBuildPhase section */ @@ -319,6 +525,8 @@ isa = PBXGroup; children = ( 37D927BA0F21331F001D4494 /* averagelinkage.cpp */, + 373C68DC0FC1C38D00137ACD /* blastalign.hpp */, + 373C68DB0FC1C38D00137ACD /* blastalign.cpp */, 37D928A60F2133C0001D4494 /* calculators */, 37D927C20F21331F001D4494 /* cluster.hpp */, 37D927C10F21331F001D4494 /* cluster.cpp */, @@ -333,8 +541,8 @@ 37D927D10F21331F001D4494 /* commandoptionparser.hpp */, 37D927D00F21331F001D4494 /* commandoptionparser.cpp */, 37D927D20F21331F001D4494 /* completelinkage.cpp */, - 37D927D40F21331F001D4494 /* database.hpp */, - 37D927D30F21331F001D4494 /* database.cpp */, + 7E4130F70F8E58FA00381DD0 /* dlibshuff.h */, + 7E4130F60F8E58FA00381DD0 /* dlibshuff.cpp */, 37D927D60F21331F001D4494 /* display.h */, 37D927D80F21331F001D4494 /* engine.hpp */, 37D927D70F21331F001D4494 /* engine.cpp */, @@ -343,16 +551,29 @@ 37D927DD0F21331F001D4494 /* fileoutput.cpp */, 37D927E00F21331F001D4494 /* globaldata.hpp */, 37D927DF0F21331F001D4494 /* globaldata.cpp */, + 373C68BB0FC1C1A600137ACD /* gotohoverlap.hpp */, + 373C68BA0FC1C1A600137ACD /* gotohoverlap.cpp */, + 375873ED0F7D646F0040F377 /* heatmap.h */, + 375873EE0F7D646F0040F377 /* heatmap.cpp */, 37D927E60F21331F001D4494 /* inputdata.h */, 37D927E50F21331F001D4494 /* inputdata.cpp */, - 37D927EA0F21331F001D4494 /* kmer.hpp */, - 37D927E90F21331F001D4494 /* kmer.cpp */, - 37D927EC0F21331F001D4494 /* kmerdb.hpp */, - 37D927EB0F21331F001D4494 /* kmerdb.cpp */, + 7E412F420F8D213C00381DD0 /* libshuff.h */, + 7E412FE90F8D3E2C00381DD0 /* libshuff.cpp */, + 37E3ED800F4D9D0D00B5DF02 /* mothur.h */, 37D927EF0F21331F001D4494 /* mothur.cpp */, 37D927F10F21331F001D4494 /* nameassignment.hpp */, 37D927F00F21331F001D4494 /* nameassignment.cpp */, + 373C691E0FC1C98600137ACD /* nast.hpp */, + 373C691D0FC1C98600137ACD /* nast.cpp */, + 373C692A0FC1C9EB00137ACD /* nastreport.hpp */, + 373C69290FC1C9EB00137ACD /* nastreport.cpp */, + 373C68CE0FC1C2D900137ACD /* 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readfasta.h */, + 378C1AF40FB0644D004D63F5 /* readfasta.cpp */, + 37D928130F21331F001D4494 /* readmatrix.hpp */, + 378C1AF70FB0644D004D63F5 /* readnexus.h */, + 378C1AF60FB0644D004D63F5 /* readnexus.cpp */, + 378C1AF80FB0644D004D63F5 /* readnexusal.h */, + 375AA1360F9E433D008EF9B8 /* readotu.h */, + 375AA1350F9E433D008EF9B8 /* readotu.cpp */, + 375AA1380F9E433D008EF9B8 /* readphylip.h */, + 375AA1370F9E433D008EF9B8 /* readphylip.cpp */, + 378C1AFC0FB0644D004D63F5 /* readseqsphylip.h */, + 378C1AFB0FB0644D004D63F5 /* readseqsphylip.cpp */, + 379643EB0FB9B5A80081FDB6 /* readseqs.cpp */, + 379643EC0FB9B5A80081FDB6 /* readseqs.h */, + 37AD4DC80F28F3DD00AA2D49 /* readtree.h */, + 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */, + ); + name = read; + sourceTree = ""; + }; 37D928A60F2133C0001D4494 /* calculators */ = { isa = PBXGroup; children = ( 37D927BE0F21331F001D4494 /* calculator.h */, + 373C69950FC1E63600137ACD /* boneh.h */, + 373C69940FC1E63600137ACD /* boneh.cpp */, 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378C1AF00FB0644D004D63F5 /* goodscoverage.cpp */, + 37C753ED0FB34A5700DBD02E /* ignoregaps.h */, 37D927E80F21331F001D4494 /* jackknife.h */, 37D927E70F21331F001D4494 /* jackknife.cpp */, + EB9303E90F534D9400E8EF26 /* logsd.h */, + EB9303EA0F534D9400E8EF26 /* logsd.cpp */, + 375873F90F7D64AB0040F377 /* nseqs.h */, 37D927F50F21331F001D4494 /* npshannon.h */, 37D927F40F21331F001D4494 /* npshannon.cpp */, + 37C753F10FB34B4700DBD02E /* onegapdist.h */, + 37C753F30FB34BBF00DBD02E /* onegapignore.h */, 379294880F2E258500B9034A /* parsimony.h */, 379294890F2E258500B9034A /* parsimony.cpp */, + EB6E68170F5F1C780044E17B /* qstat.h */, + EB6E68180F5F1C780044E17B /* qstat.cpp */, 37D928020F21331F001D4494 /* rarecalc.h */, 37D928010F21331F001D4494 /* rarecalc.cpp */, 37D9281F0F21331F001D4494 /* shannon.h */, 37D9281E0F21331F001D4494 /* shannon.cpp */, 37D928230F21331F001D4494 /* sharedace.h */, 37D928220F21331F001D4494 /* sharedace.cpp */, + 37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */, + 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */, + 7EC3D4520FA0FFF900338DA5 /* sharedanderberg.h */, + 375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */, + 375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */, 37D928250F21331F001D4494 /* sharedchao1.h */, 37D928240F21331F001D4494 /* sharedchao1.cpp */, 37D928290F21331F001D4494 /* sharedjabund.h */, 37D928280F21331F001D4494 /* sharedjabund.cpp */, + 378C1B000FB0644D004D63F5 /* sharedjackknife.h */, + 378C1AFF0FB0644D004D63F5 /* sharedjackknife.cpp */, 37D9282B0F21331F001D4494 /* sharedjclass.h */, 37D9282A0F21331F001D4494 /* sharedjclass.cpp */, 37D9282D0F21331F001D4494 /* sharedjest.h */, 37D9282C0F21331F001D4494 /* sharedjest.cpp */, + EB1217210F61C9AC004A865F /* sharedkstest.h */, + EB1217220F61C9AC004A865F /* sharedkstest.cpp */, + 375874000F7D64EF0040F377 /* sharedkulczynski.h */, + 375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */, + 375874030F7D64EF0040F377 /* sharedkulczynskicody.h */, + 375874020F7D64EF0040F377 /* sharedkulczynskicody.cpp */, + 375874010F7D64EF0040F377 /* sharedlennon.h */, + 375873FF0F7D64EF0040F377 /* sharedlennon.cpp */, + 378C1B020FB0644D004D63F5 /* sharedmarczewski.h */, + 378C1B010FB0644D004D63F5 /* sharedmarczewski.cpp */, + 375874070F7D64FC0040F377 /* sharedmorisitahorn.h */, + 375874080F7D64FC0040F377 /* sharedmorisitahorn.cpp */, + 375874090F7D64FC0040F377 /* sharedochiai.h */, + 3758740B0F7D64FC0040F377 /* sharedochiai.cpp */, + 3758740A0F7D64FC0040F377 /* sharednseqs.h */, 37D928350F21331F001D4494 /* sharedsobs.h */, 37D928340F21331F001D4494 /* sharedsobs.cpp */, 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */, @@ -428,19 +721,25 @@ 37D928380F21331F001D4494 /* sharedsorclass.cpp */, 37D9283B0F21331F001D4494 /* sharedsorest.h */, 37D9283A0F21331F001D4494 /* sharedsorest.cpp */, - 37D9283C0F21331F001D4494 /* sharedthetan.cpp */, 37D9283D0F21331F001D4494 /* sharedthetan.h */, + 37D9283C0F21331F001D4494 /* sharedthetan.cpp */, 37D9283F0F21331F001D4494 /* sharedthetayc.h */, 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */, + EB72FE250FC1F5CA0051AC11 /* shen.h */, + EB72FE240FC1F5CA0051AC11 /* shen.cpp */, 37D928410F21331F001D4494 /* simpson.h */, 37D928400F21331F001D4494 /* simpson.cpp */, 37D928430F21331F001D4494 /* sobs.h */, + 373C69980FC1E63600137ACD /* solow.cpp */, + 373C69990FC1E63600137ACD /* solow.h */, 374610810F40652400460C57 /* unweighted.h */, 374610820F40652400460C57 /* unweighted.cpp */, 37D9284E0F21331F001D4494 /* uvest.h */, 37D9284D0F21331F001D4494 /* uvest.cpp */, 3746107C0F4064D100460C57 /* weighted.h */, 3746107D0F4064D100460C57 /* weighted.cpp */, + 7EC3D4540FA0FFF900338DA5 /* whittaker.h */, + 7EC3D4530FA0FFF900338DA5 /* whittaker.cpp */, ); name = calculators; sourceTree = ""; @@ -449,18 +748,46 @@ isa = PBXGroup; children = ( 37D927CD0F21331F001D4494 /* command.hpp */, + 378DC5CD0FBDE1C8003B8607 /* aligncommand.h */, + 378DC5CE0FBDE1C8003B8607 /* aligncommand.cpp */, + 37C1D9710F86506E0059E3F0 /* binsequencecommand.h */, + 37C1D9720F86506E0059E3F0 /* binsequencecommand.cpp */, + 21DDC0190F97A8FE0060691C /* bootstrapsharedcommand.h */, + 21DDC01A0F97A8FE0060691C /* bootstrapsharedcommand.cpp */, 37D927C40F21331F001D4494 /* clustercommand.h */, 37D927C30F21331F001D4494 /* clustercommand.cpp */, 37D927C80F21331F001D4494 /* collectcommand.h */, 37D927C70F21331F001D4494 /* collectcommand.cpp */, 37D927CC0F21331F001D4494 /* collectsharedcommand.h */, 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */, + 377326640FAF16E0007ABB8B /* concensuscommand.h */, + 377326630FAF16E0007ABB8B /* concensuscommand.cpp */, 37B28F660F27590100808A62 /* deconvolutecommand.h */, 37B28F670F27590100808A62 /* deconvolutecommand.cpp */, + 37C753CC0FB3415200DBD02E /* distancecommand.h */, + 37C753CD0FB3415200DBD02E /* distancecommand.cpp */, + 378C1AEF0FB0644D004D63F5 /* filterseqscommand.h */, + 378C1AEE0FB0644D004D63F5 /* filterseqscommand.cpp */, + A70B53A50F4CD7AD0064797E /* getgroupcommand.h */, + A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */, + A70B53A70F4CD7AD0064797E /* getlabelcommand.h */, + A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */, + A70B53A90F4CD7AD0064797E /* getlinecommand.h */, + A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */, + 370B88050F8A4EE4005AB382 /* getoturepcommand.h */, + 370B88060F8A4EE4005AB382 /* getoturepcommand.cpp */, + 211A24E90FC306BC00769A33 /* getrepseqscommand.h */, + 211A24EA0FC306BC00769A33 /* getrepseqscommand.cpp */, + 375873F10F7D64800040F377 /* heatmapcommand.h */, + 375873F00F7D64800040F377 /* heatmapcommand.cpp */, 37D927E40F21331F001D4494 /* helpcommand.h */, 37D927E30F21331F001D4494 /* helpcommand.cpp */, - 37D927F20F21331F001D4494 /* nocommand.cpp */, - 37D927F30F21331F001D4494 /* nocommand.h */, + 375873F40F7D648F0040F377 /* libshuffcommand.h */, + 375873F30F7D648F0040F377 /* libshuffcommand.cpp */, + 21E859D60FC4632E005E1A48 /* matrixoutputcommand.h */, + 21E859D70FC4632E005E1A48 /* matrixoutputcommand.cpp */, + 375873F60F7D649C0040F377 /* nocommands.cpp */, + 375873F70F7D649C0040F377 /* nocommands.h */, 37D927FA0F21331F001D4494 /* parselistcommand.h */, 37D927F90F21331F001D4494 /* parselistcommand.cpp */, 3792946E0F2E191800B9034A /* parsimonycommand.h */, @@ -475,8 +802,6 @@ 372E12950F263D5A0095CF7E /* readdistcommand.cpp */, 372E126E0F26365B0095CF7E /* readotucommand.h */, 372E126F0F26365B0095CF7E /* readotucommand.cpp */, - 37AFC7A10F44703E005F492D /* readsharedcommand.h */, - 37AFC7A20F44703E005F492D /* readsharedcommand.cpp */, 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */, 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */, 37D928270F21331F001D4494 /* sharedcommand.h */, @@ -485,10 +810,14 @@ 37D928460F21331F001D4494 /* summarycommand.cpp */, 37D9284B0F21331F001D4494 /* summarysharedcommand.h */, 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */, + 211C38370F961E1F00FEE541 /* treegroupscommand.h */, + 211C38360F961E1F00FEE541 /* treegroupscommand.cpp */, 3746109B0F40657600460C57 /* unifracunweightedcommand.h */, 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */, 374610760F40645300460C57 /* unifracweightedcommand.h */, 374610770F40645300460C57 /* unifracweightedcommand.cpp */, + 37519A9F0F810D0200FED5E8 /* venncommand.h */, + 37519AA00F810D0200FED5E8 /* venncommand.cpp */, ); name = commands; sourceTree = ""; @@ -496,11 +825,25 @@ 37D928AC0F213420001D4494 /* containers */ = { isa = PBXGroup; children = ( + 373C68A10FC1C07D00137ACD /* alignment.hpp */, + 373C68A00FC1C07D00137ACD /* alignment.cpp */, + 373C68A30FC1C07D00137ACD /* alignmentcell.hpp */, + 373C68A20FC1C07D00137ACD /* alignmentcell.cpp */, + 373C69170FC1C8AF00137ACD /* blastdb.hpp */, + 373C69160FC1C8AF00137ACD /* blastdb.cpp */, + 37D927D40F21331F001D4494 /* database.hpp */, + 37D927D30F21331F001D4494 /* database.cpp */, 37D927D50F21331F001D4494 /* datavector.hpp */, 37D927DC0F21331F001D4494 /* fastamap.h */, 37D927DB0F21331F001D4494 /* fastamap.cpp */, + 375873EA0F7D64520040F377 /* fullmatrix.h */, + 375873EB0F7D64520040F377 /* fullmatrix.cpp */, 37D927E20F21331F001D4494 /* groupmap.h */, 37D927E10F21331F001D4494 /* groupmap.cpp */, + 37D927EA0F21331F001D4494 /* kmer.hpp */, + 37D927E90F21331F001D4494 /* kmer.cpp */, + 37D927EC0F21331F001D4494 /* kmerdb.hpp */, + 37D927EB0F21331F001D4494 /* kmerdb.cpp */, 37D927EE0F21331F001D4494 /* listvector.hpp */, 37D927ED0F21331F001D4494 /* listvector.cpp */, 37D927F80F21331F001D4494 /* ordervector.hpp */, @@ -509,6 +852,10 @@ 37D927FF0F21331F001D4494 /* rabundvector.cpp */, 37D9281B0F21331F001D4494 /* sabundvector.hpp */, 37D9281A0F21331F001D4494 /* sabundvector.cpp */, + 37D9281D0F21331F001D4494 /* sequence.hpp */, + 37D9281C0F21331F001D4494 /* sequence.cpp */, + 378C1AFE0FB0644D004D63F5 /* sequencedb.h */, + 378C1AFD0FB0644D004D63F5 /* sequencedb.cpp */, 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */, 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */, 37D9282F0F21331F001D4494 /* sharedordervector.h */, @@ -517,6 +864,14 @@ 37D928300F21331F001D4494 /* sharedrabundvector.cpp */, 37D928330F21331F001D4494 /* sharedsabundvector.h */, 37D928320F21331F001D4494 /* sharedsabundvector.cpp */, + 37D928450F21331F001D4494 /* sparsematrix.hpp */, + 37D928440F21331F001D4494 /* sparsematrix.cpp */, + 373C68F40FC1C6A800137ACD /* suffixdb.hpp */, + 373C68F30FC1C6A800137ACD /* suffixdb.cpp */, + 373C68F60FC1C6A800137ACD /* suffixnodes.hpp */, + 373C68F50FC1C6A800137ACD /* suffixnodes.cpp */, + 373C68F80FC1C6A800137ACD /* suffixtree.hpp */, + 373C68F70FC1C6A800137ACD /* suffixtree.cpp */, 37AD4DB90F28E2FE00AA2D49 /* tree.h */, 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */, 379293C10F2DE73400B9034A /* treemap.h */, @@ -620,7 +975,6 @@ 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */, 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */, 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */, - 37D928710F21331F001D4494 /* nocommand.cpp in Sources */, 37D928720F21331F001D4494 /* npshannon.cpp in Sources */, 37D928730F21331F001D4494 /* ordervector.cpp in Sources */, 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */, @@ -632,7 +986,6 @@ 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */, 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */, 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */, - 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */, 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */, 37D928850F21331F001D4494 /* sequence.cpp in Sources */, 37D928860F21331F001D4494 /* shannon.cpp in Sources */, @@ -678,7 +1031,74 @@ 374610830F40652400460C57 /* unweighted.cpp in Sources */, 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */, 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */, - 37AFC7A30F44703E005F492D /* readsharedcommand.cpp in Sources */, + A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */, + A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */, + A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */, + EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */, + EB9303F90F53517300E8EF26 /* geom.cpp in Sources */, + EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */, + EB1216880F619B83004A865F /* bergerparker.cpp in Sources */, + EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */, + EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */, + 375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */, + 375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */, + 375873F20F7D64800040F377 /* heatmapcommand.cpp in Sources */, + 375873F50F7D648F0040F377 /* libshuffcommand.cpp in Sources */, + 375873F80F7D649C0040F377 /* nocommands.cpp in Sources */, + 375873FD0F7D64DA0040F377 /* sharedbraycurtis.cpp in Sources */, + 375874040F7D64EF0040F377 /* sharedkulczynski.cpp in Sources */, + 375874050F7D64EF0040F377 /* sharedlennon.cpp in Sources */, + 375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */, + 3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */, + 3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */, + 37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */, + 37519AA10F810D0200FED5E8 /* venncommand.cpp in Sources */, + 37519AB50F810FAE00FED5E8 /* venn.cpp in Sources */, + 37C1D9730F86506E0059E3F0 /* binsequencecommand.cpp in Sources */, + 370B88070F8A4EE4005AB382 /* getoturepcommand.cpp in Sources */, + 7E412F490F8D21B600381DD0 /* slibshuff.cpp in Sources */, + 7E412FEA0F8D3E2C00381DD0 /* libshuff.cpp in Sources */, + 7E4130F80F8E58FA00381DD0 /* dlibshuff.cpp in Sources */, + 211C38320F961DD400FEE541 /* sharedutilities.cpp in Sources */, + 211C38380F961E1F00FEE541 /* treegroupscommand.cpp in Sources */, + 21DDC01B0F97A8FE0060691C /* bootstrapsharedcommand.cpp in Sources */, + 375AA1390F9E433D008EF9B8 /* readcolumn.cpp in Sources */, + 375AA13A0F9E433D008EF9B8 /* readotu.cpp in Sources */, + 375AA13B0F9E433D008EF9B8 /* readphylip.cpp in Sources */, + 7EC3D4550FA0FFF900338DA5 /* coverage.cpp in Sources */, + 7EC3D4560FA0FFF900338DA5 /* whittaker.cpp in Sources */, + 377326650FAF16E0007ABB8B /* concensuscommand.cpp in Sources */, + 378C1B030FB0644E004D63F5 /* filterseqscommand.cpp in Sources */, + 378C1B040FB0644E004D63F5 /* goodscoverage.cpp in Sources */, + 378C1B050FB0644E004D63F5 /* readclustal.cpp in Sources */, + 378C1B060FB0644E004D63F5 /* readfasta.cpp in Sources */, + 378C1B070FB0644E004D63F5 /* readnexus.cpp in Sources */, + 378C1B090FB0644E004D63F5 /* readseqsphylip.cpp in Sources */, + 378C1B0A0FB0644E004D63F5 /* sequencedb.cpp in Sources */, + 378C1B0B0FB0644E004D63F5 /* sharedjackknife.cpp in Sources */, + 378C1B0C0FB0644E004D63F5 /* sharedmarczewski.cpp in Sources */, + 37C753CE0FB3415200DBD02E /* distancecommand.cpp in Sources */, + 379643ED0FB9B5A80081FDB6 /* readseqs.cpp in Sources */, + 378DC5CF0FBDE1C8003B8607 /* aligncommand.cpp in Sources */, + 373C68A40FC1C07D00137ACD /* alignment.cpp in Sources */, + 373C68A50FC1C07D00137ACD /* alignmentcell.cpp in Sources */, + 373C68BC0FC1C1A600137ACD /* gotohoverlap.cpp in Sources */, + 373C68C50FC1C25F00137ACD /* overlap.cpp in Sources */, + 373C68CF0FC1C2D900137ACD /* needlemanoverlap.cpp in Sources */, + 373C68DD0FC1C38D00137ACD /* blastalign.cpp in Sources */, + 373C68E50FC1C4A500137ACD /* noalign.cpp in Sources */, + 373C68F90FC1C6A800137ACD /* suffixdb.cpp in Sources */, + 373C68FA0FC1C6A800137ACD /* suffixnodes.cpp in Sources */, + 373C68FB0FC1C6A800137ACD /* suffixtree.cpp in Sources */, + 373C69180FC1C8AF00137ACD /* blastdb.cpp in Sources */, + 373C691F0FC1C98600137ACD /* nast.cpp in Sources */, + 373C692B0FC1C9EB00137ACD /* nastreport.cpp in Sources */, + 373C699A0FC1E63600137ACD /* boneh.cpp in Sources */, + 373C699B0FC1E63600137ACD /* efron.cpp in Sources */, + 373C699C0FC1E63600137ACD /* solow.cpp in Sources */, + EB72FE260FC1F5CA0051AC11 /* shen.cpp in Sources */, + 211A24EB0FC306BC00769A33 /* getrepseqscommand.cpp in Sources */, + 21E859D80FC4632E005E1A48 /* matrixoutputcommand.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -692,7 +1112,7 @@ GCC_DYNAMIC_NO_PIC = NO; GCC_ENABLE_FIX_AND_CONTINUE = YES; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 3; + GCC_OPTIMIZATION_LEVEL = 0; GCC_PREPROCESSOR_DEFINITIONS = ( "_GLIBCXX_DEBUG=1", "_GLIBCXX_DEBUG_PEDANTIC=1", @@ -708,7 +1128,6 @@ buildSettings = { DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 3; INSTALL_PATH = /usr/local/bin; PRODUCT_NAME = mothur; }; @@ -732,7 +1151,7 @@ ppc, i386, ); - GCC_OPTIMIZATION_LEVEL = 0; + GCC_OPTIMIZATION_LEVEL = 3; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; PREBINDING = NO;