X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=74520c4da64f35434b89bb742e2bdd6c0e366288;hb=5df1b242d9c2b604eb414da44b28de81d52567d7;hp=259ef9c4f47269d52fcf86d15458e04a248c621f;hpb=b1bcc272003b50a8c06dc9120754da1f5b744598;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 259ef9c..74520c4 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -7,12 +7,31 @@ objects = { /* Begin PBXFileReference section */ + 7E84528511EF4BEB00564975 /* seqerrorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqerrorcommand.h; sourceTree = ""; }; + 7E84528611EF4BEB00564975 /* seqerrorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqerrorcommand.cpp; sourceTree = ""; }; + 7E85BD1C11EB5E9B00FD37C0 /* qualityscores.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qualityscores.h; sourceTree = ""; }; + 7E85BD1D11EB5E9B00FD37C0 /* qualityscores.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qualityscores.cpp; sourceTree = ""; }; + 7EA299BA11E384940022D8D3 /* sensspeccommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sensspeccommand.h; sourceTree = ""; }; + 7EA299BB11E384940022D8D3 /* sensspeccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sensspeccommand.cpp; sourceTree = ""; }; + 7EC61A0911BEA6AF00F668D9 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = ""; }; A703FE931194645F002C397E /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makegroupcommand.h; sourceTree = SOURCE_ROOT; }; A703FE941194645F002C397E /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makegroupcommand.cpp; sourceTree = SOURCE_ROOT; }; + A7118EE511CFCAC000CFDE03 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = degapseqscommand.h; sourceTree = ""; }; + A7118EE611CFCAC000CFDE03 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = degapseqscommand.cpp; sourceTree = ""; }; + A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrelabundcommand.h; sourceTree = ""; }; + A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrelabundcommand.cpp; sourceTree = ""; }; + A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustersplitcommand.cpp; sourceTree = ""; }; + A71D924311AEB42400D00CBC /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustersplitcommand.h; sourceTree = ""; }; + A71D924411AEB42400D00CBC /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitabundcommand.cpp; sourceTree = ""; }; + A71D924511AEB42400D00CBC /* splitabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitabundcommand.h; sourceTree = ""; }; + A71D924611AEB42400D00CBC /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitmatrix.cpp; sourceTree = ""; }; + A71D924711AEB42400D00CBC /* splitmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitmatrix.h; sourceTree = ""; }; A72B3A62118B37FD004B9F8D /* phylodiversitycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversitycommand.h; sourceTree = ""; }; A72B3A63118B37FD004B9F8D /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversitycommand.cpp; sourceTree = ""; }; A72B3A7B118B4D1B004B9F8D /* phylodiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversity.h; sourceTree = ""; }; A72B3A7C118B4D1B004B9F8D /* phylodiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversity.cpp; sourceTree = ""; }; + A732505E11E49EF100484B90 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sffinfocommand.h; sourceTree = ""; }; + A732505F11E49EF100484B90 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffinfocommand.cpp; sourceTree = ""; }; A73953DA11987ED100B0B160 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chopseqscommand.h; sourceTree = ""; }; A73953DB11987ED100B0B160 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chopseqscommand.cpp; sourceTree = ""; }; A747E79B1163442A00FB9042 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckcommand.h; sourceTree = ""; }; @@ -24,14 +43,19 @@ A76AAD03117F322B003D8DA1 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylosummary.cpp; sourceTree = ""; }; A76C4A1011876BAF0009460B /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setlogfilecommand.h; sourceTree = SOURCE_ROOT; }; A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setlogfilecommand.cpp; sourceTree = SOURCE_ROOT; }; + A780E6CB11E7745D00BB5718 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = endiannessmacros.h; sourceTree = ""; }; A78254461164D7790002E2DD /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerapintailcommand.h; sourceTree = ""; }; A78254471164D7790002E2DD /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerapintailcommand.cpp; sourceTree = ""; }; A7825502116519F70002E2DD /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerabellerophoncommand.h; sourceTree = ""; }; A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerabellerophoncommand.cpp; sourceTree = ""; }; A78434881162224F00100BE0 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraccodecommand.h; sourceTree = ""; }; A78434891162224F00100BE0 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraccodecommand.cpp; sourceTree = ""; }; + A7BBDA7B11B5694E006E6551 /* classifyotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyotucommand.h; sourceTree = ""; }; + A7BBDA7C11B5694E006E6551 /* classifyotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyotucommand.cpp; sourceTree = ""; }; A7D215C811996C6E00F13F13 /* clearcutcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clearcutcommand.h; sourceTree = ""; }; A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearcutcommand.cpp; sourceTree = ""; }; + A7D216061199C47F00F13F13 /* catchallcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = catchallcommand.h; sourceTree = ""; }; + A7D216071199C47F00F13F13 /* catchallcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = catchallcommand.cpp; sourceTree = ""; }; A7DA1FEC113FECD400BF472F /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = ""; }; A7DA1FED113FECD400BF472F /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = ""; }; A7DA1FEE113FECD400BF472F /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = ""; }; @@ -463,6 +487,7 @@ A7DA203C113FECD400BF472F /* display.h */, A7DA2042113FECD400BF472F /* dlibshuff.cpp */, A7DA2043113FECD400BF472F /* dlibshuff.h */, + A780E6CB11E7745D00BB5718 /* endiannessmacros.h */, A7DA2048113FECD400BF472F /* engine.cpp */, A7DA2049113FECD400BF472F /* engine.hpp */, A7DA204C113FECD400BF472F /* fileoutput.cpp */, @@ -630,6 +655,7 @@ A7DA2170113FECD400BF472F /* uvest.h */, A7DA2179113FECD400BF472F /* weighted.cpp */, A7DA217A113FECD400BF472F /* weighted.h */, + 7EC61A0911BEA6AF00F668D9 /* weightedlinkage.cpp */, A7DA217B113FECD400BF472F /* whittaker.cpp */, A7DA217C113FECD400BF472F /* whittaker.h */, ); @@ -642,17 +668,19 @@ A7DA202B113FECD400BF472F /* command.hpp */, A7DA1FEF113FECD400BF472F /* aligncommand.h */, A7DA1FEE113FECD400BF472F /* aligncommand.cpp */, - A7DA1FFD113FECD400BF472F /* binsequencecommand.cpp */, A7DA1FFE113FECD400BF472F /* binsequencecommand.h */, + A7DA1FFD113FECD400BF472F /* binsequencecommand.cpp */, A7DA2007113FECD400BF472F /* bootstrapsharedcommand.cpp */, A7DA2008113FECD400BF472F /* bootstrapsharedcommand.h */, + A7D216061199C47F00F13F13 /* catchallcommand.h */, + A7D216071199C47F00F13F13 /* catchallcommand.cpp */, A7DA2017113FECD400BF472F /* chimeraseqscommand.cpp */, - A78434881162224F00100BE0 /* chimeraccodecommand.h */, A7DA2018113FECD400BF472F /* chimeraseqscommand.h */, A7825502116519F70002E2DD /* chimerabellerophoncommand.h */, A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */, A747E79B1163442A00FB9042 /* chimeracheckcommand.h */, A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */, + A78434881162224F00100BE0 /* chimeraccodecommand.h */, A78434891162224F00100BE0 /* chimeraccodecommand.cpp */, A78254461164D7790002E2DD /* chimerapintailcommand.h */, A78254471164D7790002E2DD /* chimerapintailcommand.cpp */, @@ -662,16 +690,22 @@ A73953DB11987ED100B0B160 /* chopseqscommand.cpp */, A7DA201E113FECD400BF472F /* classifyseqscommand.h */, A7DA201D113FECD400BF472F /* classifyseqscommand.cpp */, + A7BBDA7B11B5694E006E6551 /* classifyotucommand.h */, + A7BBDA7C11B5694E006E6551 /* classifyotucommand.cpp */, A7D215C811996C6E00F13F13 /* clearcutcommand.h */, A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */, A7DA2021113FECD400BF472F /* clustercommand.cpp */, A7DA2022113FECD400BF472F /* clustercommand.h */, + A71D924311AEB42400D00CBC /* clustersplitcommand.h */, + A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */, A7DA2025113FECD400BF472F /* collectcommand.cpp */, A7DA2026113FECD400BF472F /* collectcommand.h */, A7DA2029113FECD400BF472F /* collectsharedcommand.cpp */, A7DA202A113FECD400BF472F /* collectsharedcommand.h */, A7DA2031113FECD400BF472F /* consensuscommand.cpp */, A7DA2032113FECD400BF472F /* consensuscommand.h */, + A7118EE511CFCAC000CFDE03 /* degapseqscommand.h */, + A7118EE611CFCAC000CFDE03 /* degapseqscommand.cpp */, A7DA203A113FECD400BF472F /* deconvolutecommand.cpp */, A7DA203B113FECD400BF472F /* deconvolutecommand.h */, A7DA203E113FECD400BF472F /* distancecommand.cpp */, @@ -682,12 +716,14 @@ A7DA205B113FECD400BF472F /* getgroupcommand.h */, A7DA205C113FECD400BF472F /* getlabelcommand.cpp */, A7DA205D113FECD400BF472F /* getlabelcommand.h */, - A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */, A7DA205F113FECD400BF472F /* getlistcountcommand.h */, - A7DA2060113FECD400BF472F /* getoturepcommand.cpp */, + A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */, A7DA2061113FECD400BF472F /* getoturepcommand.h */, + A7DA2060113FECD400BF472F /* getoturepcommand.cpp */, A7DA2062113FECD400BF472F /* getrabundcommand.cpp */, A7DA2063113FECD400BF472F /* getrabundcommand.h */, + A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */, + A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */, A7DA2064113FECD400BF472F /* getsabundcommand.cpp */, A7DA2065113FECD400BF472F /* getsabundcommand.h */, A7DA2067113FECD400BF472F /* getseqscommand.h */, @@ -752,14 +788,22 @@ A7DA20F8113FECD400BF472F /* screenseqscommand.cpp */, A7DA20FB113FECD400BF472F /* secondarystructurecommand.h */, A7DA20FA113FECD400BF472F /* secondarystructurecommand.cpp */, + 7EA299BA11E384940022D8D3 /* sensspeccommand.h */, + 7EA299BB11E384940022D8D3 /* sensspeccommand.cpp */, + 7E84528511EF4BEB00564975 /* seqerrorcommand.h */, + 7E84528611EF4BEB00564975 /* seqerrorcommand.cpp */, A7DA20FD113FECD400BF472F /* seqsummarycommand.h */, A7DA20FC113FECD400BF472F /* seqsummarycommand.cpp */, A7DA2103113FECD400BF472F /* setdircommand.h */, A7DA2102113FECD400BF472F /* setdircommand.cpp */, A76C4A1011876BAF0009460B /* setlogfilecommand.h */, A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */, + A732505E11E49EF100484B90 /* sffinfocommand.h */, + A732505F11E49EF100484B90 /* sffinfocommand.cpp */, A7DA2110113FECD400BF472F /* sharedcommand.h */, A7DA210F113FECD400BF472F /* sharedcommand.cpp */, + A71D924511AEB42400D00CBC /* splitabundcommand.h */, + A71D924411AEB42400D00CBC /* splitabundcommand.cpp */, A7DA2155113FECD400BF472F /* summarycommand.h */, A7DA2154113FECD400BF472F /* summarycommand.cpp */, A7DA2159113FECD400BF472F /* summarysharedcommand.h */, @@ -783,6 +827,8 @@ A7CB594211402F430010EB83 /* containers */ = { isa = PBXGroup; children = ( + 7E85BD1C11EB5E9B00FD37C0 /* qualityscores.h */, + 7E85BD1D11EB5E9B00FD37C0 /* qualityscores.cpp */, A7DA1FF3113FECD400BF472F /* alignmentcell.hpp */, A7DA1FF2113FECD400BF472F /* alignmentcell.cpp */, A7DA1FF4113FECD400BF472F /* alignmentdb.cpp */, @@ -911,6 +957,8 @@ A7DA20ED113FECD400BF472F /* readphylip.h */, A7DA20EE113FECD400BF472F /* readtree.cpp */, A7DA20EF113FECD400BF472F /* readtree.h */, + A71D924711AEB42400D00CBC /* splitmatrix.h */, + A71D924611AEB42400D00CBC /* splitmatrix.cpp */, ); name = read; sourceTree = ""; @@ -938,6 +986,7 @@ isa = PBXProject; attributes = { BuildIndependentTargetsInParallel = YES; + ORGANIZATIONNAME = "Schloss Lab"; }; buildConfigurationList = 1DEB919308733D9F0010E9CD /* Build configuration list for PBXProject "Mothur" */; compatibilityVersion = "Xcode 3.0"; @@ -975,7 +1024,7 @@ GCC_WARN_UNUSED_VARIABLE = YES; LINK_WITH_STANDARD_LIBRARIES = YES; PREBINDING = NO; - SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk"; + SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.6.sdk"; }; name = Release; };