X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=57af531c164b323c10eef636b574d969a7c7ee48;hb=c25c956e4a3c7ca3271d48ee6215c72b2ec80c44;hp=62d929a1ba847330373bd88396c2904869525f37;hpb=9099173ea17b13be96563c7579ecc8dc2ef65d20;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 62d929a..57af531 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -14,6 +14,10 @@ 3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; }; 374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; }; 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; }; + 374CD63F0F65832000D90B4A /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; 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fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = ""; }; + 3709370A0F6E7FC100EB4C2C /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = ""; }; 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = ""; }; 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = ""; }; 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = ""; }; @@ -126,6 +130,14 @@ 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = ""; }; 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; 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}; + 3765B4780F77D15900C3EDC5 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = ""; }; + 3765B4790F77D15900C3EDC5 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = ""; }; + 3782163B0F616079008E1F6D /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = ""; }; + 3782163C0F616079008E1F6D /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = ""; }; 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = ""; }; 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = ""; 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}; 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = ""; }; - 37D927F20F21331F001D4494 /* nocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommand.cpp; sourceTree = ""; }; - 37D927F30F21331F001D4494 /* nocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommand.h; sourceTree = ""; }; 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = ""; }; 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = ""; }; 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = ""; }; @@ -380,8 +388,6 @@ 37D928210F21331F001D4494 /* shared.h */, 37D928200F21331F001D4494 /* shared.cpp */, 37D928420F21331F001D4494 /* singlelinkage.cpp */, - 37D928450F21331F001D4494 /* sparsematrix.hpp */, - 37D928440F21331F001D4494 /* sparsematrix.cpp */, 37D928480F21331F001D4494 /* summarydata.h */, 37D928490F21331F001D4494 /* summarydisplay.h */, 37D9284C0F21331F001D4494 /* utilities.hpp */, @@ -409,10 +415,13 @@ 37D927BB0F21331F001D4494 /* bootstrap.cpp */, 37D927C00F21331F001D4494 /* chao1.h */, 37D927BF0F21331F001D4494 /* chao1.cpp */, + 374CD6EF0F65A4C100D90B4A /* coverage.h */, + 374CD6F00F65A4C100D90B4A /* coverage.cpp */, 37D927E80F21331F001D4494 /* jackknife.h */, 37D927E70F21331F001D4494 /* jackknife.cpp */, 37D927F50F21331F001D4494 /* npshannon.h */, 37D927F40F21331F001D4494 /* npshannon.cpp */, + 370936DE0F6E7A4A00EB4C2C /* nseqs.h */, 379294880F2E258500B9034A /* parsimony.h */, 379294890F2E258500B9034A /* parsimony.cpp */, 37D928020F21331F001D4494 /* rarecalc.h */, @@ -429,6 +438,7 @@ 37D9282A0F21331F001D4494 /* sharedjclass.cpp */, 37D9282D0F21331F001D4494 /* sharedjest.h */, 37D9282C0F21331F001D4494 /* sharedjest.cpp */, + 3709370A0F6E7FC100EB4C2C /* sharednseqs.h */, 37D928350F21331F001D4494 /* sharedsobs.h */, 37D928340F21331F001D4494 /* sharedsobs.cpp */, 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */, @@ -476,8 +486,10 @@ A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */, 37D927E40F21331F001D4494 /* helpcommand.h */, 37D927E30F21331F001D4494 /* helpcommand.cpp */, - 37D927F30F21331F001D4494 /* nocommand.h */, - 37D927F20F21331F001D4494 /* nocommand.cpp */, + 374CD63D0F65832000D90B4A /* libshuffcommand.h */, + 374CD63E0F65832000D90B4A /* libshuffcommand.cpp */, + 3765B4790F77D15900C3EDC5 /* nocommands.h */, + 3765B4780F77D15900C3EDC5 /* nocommands.cpp */, 37D927FA0F21331F001D4494 /* parselistcommand.h */, 37D927F90F21331F001D4494 /* parselistcommand.cpp */, 3792946E0F2E191800B9034A /* parsimonycommand.h */, @@ -492,8 +504,6 @@ 372E12950F263D5A0095CF7E /* readdistcommand.cpp */, 372E126E0F26365B0095CF7E /* readotucommand.h */, 372E126F0F26365B0095CF7E /* readotucommand.cpp */, - 37AFC7A10F44703E005F492D /* readsharedcommand.h */, - 37AFC7A20F44703E005F492D /* readsharedcommand.cpp */, 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */, 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */, 37D928270F21331F001D4494 /* sharedcommand.h */, @@ -516,6 +526,8 @@ 37D927D50F21331F001D4494 /* datavector.hpp */, 37D927DC0F21331F001D4494 /* fastamap.h */, 37D927DB0F21331F001D4494 /* fastamap.cpp */, + 3782163B0F616079008E1F6D /* fullmatrix.h */, + 3782163C0F616079008E1F6D /* fullmatrix.cpp */, 37D927E20F21331F001D4494 /* groupmap.h */, 37D927E10F21331F001D4494 /* groupmap.cpp */, 37D927EE0F21331F001D4494 /* listvector.hpp */, @@ -534,6 +546,8 @@ 37D928300F21331F001D4494 /* sharedrabundvector.cpp */, 37D928330F21331F001D4494 /* sharedsabundvector.h */, 37D928320F21331F001D4494 /* sharedsabundvector.cpp */, + 37D928450F21331F001D4494 /* sparsematrix.hpp */, + 37D928440F21331F001D4494 /* sparsematrix.cpp */, 37AD4DB90F28E2FE00AA2D49 /* tree.h */, 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */, 379293C10F2DE73400B9034A /* treemap.h */, @@ -637,7 +651,6 @@ 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */, 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */, 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */, - 37D928710F21331F001D4494 /* nocommand.cpp in Sources */, 37D928720F21331F001D4494 /* npshannon.cpp in Sources */, 37D928730F21331F001D4494 /* ordervector.cpp in Sources */, 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */, @@ -695,10 +708,13 @@ 374610830F40652400460C57 /* unweighted.cpp in Sources */, 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */, 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */, - 37AFC7A30F44703E005F492D /* readsharedcommand.cpp in Sources */, A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */, A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */, A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */, + 3782163D0F616079008E1F6D /* fullmatrix.cpp in Sources */, + 374CD63F0F65832000D90B4A /* libshuffcommand.cpp in Sources */, + 374CD6F10F65A4C100D90B4A /* coverage.cpp in Sources */, + 3765B47A0F77D15900C3EDC5 /* nocommands.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -740,6 +756,7 @@ GCC_OPTIMIZATION_LEVEL = 3; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; + INSTALL_MODE_FLAG = "a-w,a+rX"; PREBINDING = NO; SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk"; }; @@ -755,6 +772,7 @@ GCC_OPTIMIZATION_LEVEL = 0; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; + INSTALL_MODE_FLAG = "a-w,a+rX"; PREBINDING = NO; SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk"; };