X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=284bb592f407196ae05100feb4f0c45160e68027;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=15a5cff06d869482c252cdc50e82c5ec0a75abdf;hpb=1f0e54b53b714781f3f2fee7d01177fade98a625;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 15a5cff..284bb59 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -44,6 +44,8 @@ A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; }; A74D59A4159A1E2000043046 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; }; A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; }; + A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */; }; + A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */; }; A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; }; A76CDD821510F143004C8458 /* prcseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A76CDD811510F143004C8458 /* prcseqscommand.cpp */; }; A7730EFF13967241007433A3 /* countseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7730EFE13967241007433A3 /* countseqscommand.cpp */; }; @@ -58,6 +60,7 @@ A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; }; A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; }; A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; }; + A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */; }; A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; }; A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */; }; A7A0671A1562946F0095C8C5 /* listotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */; }; @@ -367,7 +370,7 @@ outputFiles = ( "$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o", ); - script = "/usr/local/gfortran/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o"; + script = "/usr/local/bin/gfortran -g -m64 -c ${PROJECT_DIR}/${INPUT_FILE_NAME} -o ${TARGET_BUILD_DIR}/${INPUT_FILE_BASE}.o"; }; /* End PBXBuildRule section */ @@ -461,6 +464,10 @@ A74D59A6159A1E3600043046 /* counttable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = counttable.h; sourceTree = ""; }; A754149514840CF7005850D1 /* summaryqualcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summaryqualcommand.h; sourceTree = ""; }; A754149614840CF7005850D1 /* summaryqualcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summaryqualcommand.cpp; sourceTree = ""; }; + A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = getmetacommunitycommand.h; sourceTree = ""; }; + A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getmetacommunitycommand.cpp; sourceTree = ""; }; + A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qFinderDMM.cpp; sourceTree = ""; }; + A7548FAF171440ED00B1F05A /* qFinderDMM.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qFinderDMM.h; sourceTree = ""; }; A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = homovacommand.h; sourceTree = ""; }; A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = homovacommand.cpp; sourceTree = ""; }; A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcrseqscommand.h; sourceTree = ""; }; @@ -487,6 +494,8 @@ A79234D613C74BF6002B08E2 /* mothurfisher.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurfisher.cpp; sourceTree = ""; }; A795840B13F13CD900F201D5 /* countgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = countgroupscommand.h; sourceTree = ""; }; A795840C13F13CD900F201D5 /* countgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = countgroupscommand.cpp; sourceTree = ""; }; + A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergetaxsummarycommand.h; sourceTree = ""; }; + A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergetaxsummarycommand.cpp; sourceTree = ""; }; A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makefastqcommand.h; sourceTree = ""; }; A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = ""; }; A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filtersharedcommand.cpp; sourceTree = ""; }; @@ -1189,6 +1198,8 @@ A7E9B77C12D37EC400DA6239 /* overlap.hpp */, A7E9B79B12D37EC400DA6239 /* progress.cpp */, A7E9B79C12D37EC400DA6239 /* progress.hpp */, + A7548FAF171440ED00B1F05A /* qFinderDMM.h */, + A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */, A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */, A7386C191619C9FB00651424 /* randomforest */, A7E9B7A612D37EC400DA6239 /* rarecalc.h */, @@ -1372,6 +1383,8 @@ A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */, A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */, A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, + A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, + A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, A70056E8156A93E300924A2D /* getotulabelscommand.h */, A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, @@ -1430,6 +1443,8 @@ A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */, A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */, A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */, + A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */, + A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */, A7E9B75812D37EC400DA6239 /* metastatscommand.h */, A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */, A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */, @@ -1725,11 +1740,11 @@ A7E9B66512D37EC400DA6239 /* blastdb.hpp */, A74D59A6159A1E3600043046 /* counttable.h */, A74D59A3159A1E2000043046 /* counttable.cpp */, - A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, + A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, A7E9B6DF12D37EC400DA6239 /* fastamap.h */, A7E9B6E812D37EC400DA6239 /* flowdata.h */, @@ -1953,7 +1968,7 @@ 08FB7793FE84155DC02AAC07 /* Project object */ = { isa = PBXProject; attributes = { - LastUpgradeCheck = 0420; + LastUpgradeCheck = 0460; ORGANIZATIONNAME = "Schloss Lab"; }; buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */; @@ -2328,6 +2343,9 @@ A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */, A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */, A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */, + A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */, + A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */, + A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2347,7 +2365,7 @@ GCC_OPTIMIZATION_LEVEL = 3; "INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR; PRODUCT_NAME = mothur; - SDKROOT = macosx10.6; + SDKROOT = macosx10.8; SKIP_INSTALL = NO; }; name = Debug; @@ -2363,6 +2381,7 @@ GCC_OPTIMIZATION_LEVEL = 3; GCC_WARN_UNUSED_VALUE = YES; PRODUCT_NAME = mothur; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Release; @@ -2378,9 +2397,9 @@ GCC_ENABLE_SSE42_EXTENSIONS = NO; GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( - "MOTHUR_FILES=\"\\\"../release\\\"\"", - "VERSION=\"\\\"1.28.0\\\"\"", - "RELEASE_DATE=\"\\\"11/2/2012\\\"\"", + "MOTHUR_FILES=\"\\\"../../release\\\"\"", + "VERSION=\"\\\"1.29.2\\\"\"", + "RELEASE_DATE=\"\\\"2/12/2013\\\"\"", ); "GCC_VERSION[arch=*]" = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; @@ -2399,7 +2418,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx10.6; + SDKROOT = macosx; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = ""; }; @@ -2415,8 +2434,8 @@ GCC_MODEL_TUNING = ""; GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( - "VERSION=\"\\\"1.28.0\\\"\"", - "RELEASE_DATE=\"\\\"11/2/2012\\\"\"", + "VERSION=\"\\\"1.30.0\\\"\"", + "RELEASE_DATE=\"\\\"4/01/2013\\\"\"", ); GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; @@ -2437,7 +2456,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx10.6; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Release;