X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=1b87a4f360376eb978f94c7a1e846ec2a18ffb7c;hb=d04f948b1a2a1a2984fc4a45d04403b8c121c5bc;hp=7a32b803547870fb6ad5c2f96f8a7835504fd1b7;hpb=ffe79bafe77e733e3a8751114f0726b90058fbce;p=mothur.git

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 7a32b80..1b87a4f 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -9,6 +9,8 @@
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 		A70332B712D3A13400761E33 /* makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* makefile */; };
+		A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
+		A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
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@@ -157,7 +159,7 @@
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+		A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */; };
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@@ -280,6 +282,8 @@
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 		A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
+		A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC480D12D788F20055BC5C /* linearalgebra.cpp */; };
+		A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC486612D795D60055BC5C /* pcacommand.cpp */; };
 /* End PBXBuildFile section */
 
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@@ -298,6 +302,10 @@
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 		A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = "<group>"; };
+		A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylipvector.h; sourceTree = "<group>"; };
+		A713EBAB12DC7613000092AC /* readphylipvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylipvector.cpp; sourceTree = "<group>"; };
+		A713EBEB12DC7C5E000092AC /* nmdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nmdscommand.h; sourceTree = "<group>"; };
+		A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nmdscommand.cpp; sourceTree = "<group>"; };
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@@ -610,8 +618,8 @@
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+		A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
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+		A7FC486612D795D60055BC5C /* pcacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pcacommand.cpp; sourceTree = "<group>"; };
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@@ -930,6 +942,8 @@
 				A7E9B72D12D37EC400DA6239 /* inputdata.cpp */,
 				A7E9B73912D37EC400DA6239 /* libshuff.cpp */,
 				A7E9B73A12D37EC400DA6239 /* libshuff.h */,
+				A7FC480C12D788F20055BC5C /* linearalgebra.h */,
+				A7FC480D12D788F20055BC5C /* linearalgebra.cpp */,
 				A7E9BA5612D39BD800DA6239 /* metastats */,
 				A7E9B75B12D37EC400DA6239 /* mothur.cpp */,
 				A7E9B75C12D37EC400DA6239 /* mothur.h */,
@@ -1100,6 +1114,8 @@
 				A7E9B76912D37EC400DA6239 /* nocommands.cpp */,
 				A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */,
 				A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */,
+				A713EBEB12DC7C5E000092AC /* nmdscommand.h */,
+				A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */,
 				A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */,
 				A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */,
 				A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */,
@@ -1110,8 +1126,10 @@
 				A7E9B78212D37EC400DA6239 /* parselistscommand.h */,
 				A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */,
 				A7E9B78612D37EC400DA6239 /* parsimonycommand.h */,
-				A7E9B78712D37EC400DA6239 /* pcacommand.cpp */,
-				A7E9B78812D37EC400DA6239 /* pcacommand.h */,
+				A7FC486512D795D60055BC5C /* pcacommand.h */,
+				A7FC486612D795D60055BC5C /* pcacommand.cpp */,
+				A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */,
+				A7E9B78812D37EC400DA6239 /* pcoacommand.h */,
 				A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */,
 				A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */,
 				A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */,
@@ -1511,6 +1529,8 @@
 				A7E9B7BE12D37EC400DA6239 /* readphylip.h */,
 				A7E9B7BF12D37EC400DA6239 /* readtree.cpp */,
 				A7E9B7C012D37EC400DA6239 /* readtree.h */,
+				A713EBAA12DC7613000092AC /* readphylipvector.h */,
+				A713EBAB12DC7613000092AC /* readphylipvector.cpp */,
 				A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */,
 				A7E9B84412D37EC400DA6239 /* splitmatrix.h */,
 			);
@@ -1732,7 +1752,7 @@
 				A7E9B91212D37EC400DA6239 /* parselistscommand.cpp in Sources */,
 				A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */,
 				A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */,
-				A7E9B91512D37EC400DA6239 /* pcacommand.cpp in Sources */,
+				A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */,
 				A7E9B91612D37EC400DA6239 /* phylodiversity.cpp in Sources */,
 				A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */,
 				A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */,
@@ -1856,6 +1876,10 @@
 				A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */,
 				A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */,
 				A70332B712D3A13400761E33 /* makefile in Sources */,
+				A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */,
+				A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */,
+				A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */,
+				A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};