X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=18266f9acd07fec9a4147711733245c6dee0c165;hb=002421a439168e2610a2b62f1318f21c7202fe6d;hp=849d202a94791fcc066d5d7fd4a275c54958ae58;hpb=776bea3a7d6dcc817be35357ea15bf88e51b423f;p=mothur.git

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 849d202..18266f9 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -14,6 +14,10 @@
 		A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
 		A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */; };
 		A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
+		A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
+		A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; };
+		A799F6571309C22A00AEEFA0 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F6561309C22A00AEEFA0 /* anosimcommand.cpp */; };
+		A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; };
 		A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
 		A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
 		A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65312D37EC300DA6239 /* alignment.cpp */; };
@@ -285,6 +289,7 @@
 		A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87C12D37EC400DA6239 /* weighted.cpp */; };
 		A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */; };
 		A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
+		A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FA10011302E096003860FE /* mantelcommand.cpp */; };
 		A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC480D12D788F20055BC5C /* linearalgebra.cpp */; };
 		A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC486612D795D60055BC5C /* pcacommand.cpp */; };
 /* End PBXBuildFile section */
@@ -315,7 +320,15 @@
 		A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergegroupscommand.cpp; sourceTree = "<group>"; };
 		A727864212E9E28C00F86ABA /* removerarecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removerarecommand.h; sourceTree = "<group>"; };
 		A727864312E9E28C00F86ABA /* removerarecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removerarecommand.cpp; sourceTree = "<group>"; };
+		A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = homovacommand.h; sourceTree = "<group>"; };
+		A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = homovacommand.cpp; sourceTree = "<group>"; };
+		A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makefastqcommand.h; sourceTree = "<group>"; };
+		A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makefastqcommand.cpp; sourceTree = "<group>"; };
+		A799F6551309C22A00AEEFA0 /* anosimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = anosimcommand.h; sourceTree = "<group>"; };
+		A799F6561309C22A00AEEFA0 /* anosimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = anosimcommand.cpp; sourceTree = "<group>"; };
 		A7A61F1A130035C800E05B6B /* LICENSE */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = LICENSE; sourceTree = "<group>"; };
+		A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = amovacommand.h; sourceTree = "<group>"; };
+		A7A61F2C130062E000E05B6B /* amovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = amovacommand.cpp; sourceTree = "<group>"; };
 		A7E9B64F12D37EC300DA6239 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
 		A7E9B65012D37EC300DA6239 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
 		A7E9B65112D37EC300DA6239 /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = "<group>"; };
@@ -878,6 +891,8 @@
 		A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = SOURCE_ROOT; };
 		A7E9B87F12D37EC400DA6239 /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = whittaker.cpp; sourceTree = "<group>"; };
 		A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = "<group>"; };
+		A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = "<group>"; };
+		A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mantelcommand.cpp; sourceTree = "<group>"; };
 		A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = linearalgebra.h; sourceTree = "<group>"; };
 		A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
 		A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcacommand.h; sourceTree = "<group>"; };
@@ -1021,6 +1036,10 @@
 				A7E9B6AE12D37EC400DA6239 /* command.hpp */,
 				A7E9B65112D37EC300DA6239 /* aligncommand.cpp */,
 				A7E9B65212D37EC300DA6239 /* aligncommand.h */,
+				A7A61F2B130062E000E05B6B /* amovacommand.h */,
+				A7A61F2C130062E000E05B6B /* amovacommand.cpp */,
+				A799F6551309C22A00AEEFA0 /* anosimcommand.h */,
+				A799F6561309C22A00AEEFA0 /* anosimcommand.cpp */,
 				A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */,
 				A7E9B66112D37EC300DA6239 /* binsequencecommand.h */,
 				A7E9B66A12D37EC400DA6239 /* bootstrapsharedcommand.cpp */,
@@ -1107,12 +1126,18 @@
 				A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */,
 				A7E9B72812D37EC400DA6239 /* helpcommand.cpp */,
 				A7E9B72912D37EC400DA6239 /* helpcommand.h */,
+				A75790571301749D00A30DAB /* homovacommand.h */,
+				A75790581301749D00A30DAB /* homovacommand.cpp */,
 				A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
 				A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */,
 				A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
 				A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
 				A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */,
 				A7E9B73E12D37EC400DA6239 /* listseqscommand.h */,
+				A7FA10001302E096003860FE /* mantelcommand.h */,
+				A7FA10011302E096003860FE /* mantelcommand.cpp */,
+				A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */,
+				A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
 				A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
 				A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
 				A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */,
@@ -1475,8 +1500,8 @@
 				A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */,
 				A7E9B68912D37EC400DA6239 /* chimeraslayer.h */,
 				A7E9B6C112D37EC400DA6239 /* decalc.cpp */,
-				A7E9B6C212D37EC400DA6239 /* decalc.h */,
 				A7E9B74612D37EC400DA6239 /* maligner.h */,
+				A7E9B6C212D37EC400DA6239 /* decalc.h */,
 				A7E9B74512D37EC400DA6239 /* maligner.cpp */,
 				A7E9B79312D37EC400DA6239 /* pintail.cpp */,
 				A7E9B79412D37EC400DA6239 /* pintail.h */,
@@ -1903,6 +1928,11 @@
 				A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */,
 				A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */,
 				7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */,
+				A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */,
+				A75790591301749D00A30DAB /* homovacommand.cpp in Sources */,
+				A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */,
+				A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */,
+				A799F6571309C22A00AEEFA0 /* anosimcommand.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
@@ -1946,7 +1976,7 @@
 				GCC_PREPROCESSOR_DEFINITIONS = (
 					"MOTHUR_FILES=\"\\\"../release\\\"\"",
 					"VERSION=\"\\\"1.16.0\\\"\"",
-					"RELEASE_DATE=\"\\\"1/26/2010\\\"\"",
+					"RELEASE_DATE=\"\\\"2/7/2011\\\"\"",
 				);
 				GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
 				GCC_WARN_ABOUT_RETURN_TYPE = YES;