X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=1387399e7be27dcf0f80316478c2519fb5d5daf3;hb=aa23898d895a8c04cc4582a8809343df0aef6622;hp=2550873ae612a60d93d937c21908389e515a306b;hpb=57b3c96832667c1b70d4d526331f52e3d49e8237;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 2550873..1387399 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -3,7 +3,7 @@ archiveVersion = 1; classes = { }; - objectVersion = 45; + objectVersion = 46; objects = { /* Begin PBXBuildFile section */ @@ -15,6 +15,7 @@ A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71CB15E130B04A2001E7287 /* anosimcommand.cpp */; }; A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */; }; A721765713BB9F7D0014DAAE /* referencedb.cpp in Sources */ = {isa = PBXBuildFile; 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fileRef = A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */; }; + A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */; }; + A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; }; A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; }; A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; }; A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; }; @@ -61,6 +64,7 @@ A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; 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}; A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylosummary.cpp; sourceTree = ""; }; @@ -1126,6 +1132,8 @@ A7DAAFA3133A254E003956EB /* commandparameter.h */, A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */, A7E9BA4212D3960D00DA6239 /* containers */, + A7E9B6B612D37EC400DA6239 /* consensus.h */, + A7E9B6B512D37EC400DA6239 /* consensus.cpp */, A7AACFBA132FE008003D6C4D /* currentfile.h */, A7E9B6C912D37EC400DA6239 /* display.h */, A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */, @@ -1188,6 +1196,8 @@ A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */, A7E9B83012D37EC400DA6239 /* slibshuff.cpp */, A7E9B83112D37EC400DA6239 /* slibshuff.h */, + A7876A28152A018B00A0AE86 /* subsample.h */, + A7876A25152A017C00A0AE86 /* subsample.cpp */, A7C3DC0E14FE469500FE1924 /* trialswap2.h */, A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */, A7FF19F0140FFDA500AD216D /* trimoligos.h */, @@ -1300,8 +1310,6 @@ A71CB15E130B04A2001E7287 /* anosimcommand.cpp */, A7E9B66112D37EC300DA6239 /* binsequencecommand.h */, A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */, - A7E9B66B12D37EC400DA6239 /* bootstrapsharedcommand.h */, - A7E9B66A12D37EC400DA6239 /* bootstrapsharedcommand.cpp */, A7E9B67312D37EC400DA6239 /* catchallcommand.h */, A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */, A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */, @@ -1342,8 +1350,6 @@ A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */, A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */, A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */, - A7E9B6B612D37EC400DA6239 /* consensuscommand.h */, - A7E9B6B512D37EC400DA6239 /* consensuscommand.cpp */, A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */, A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */, A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */, @@ -1354,6 +1360,8 @@ A795840C13F13CD900F201D5 /* countgroupscommand.cpp */, A7730EFD13967241007433A3 /* countseqscommand.h */, A7730EFE13967241007433A3 /* countseqscommand.cpp */, + A77EBD2C1523707F00ED407C /* createdatabasecommand.h */, + A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */, A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */, A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */, A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */, @@ -1412,6 +1420,8 @@ A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */, A7FA10001302E096003860FE /* mantelcommand.h */, A7FA10011302E096003860FE /* mantelcommand.cpp */, + A724D2B4153C8600000A826F /* makebiomcommand.h */, + A724D2B6153C8628000A826F /* makebiomcommand.cpp */, A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */, A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */, A7E9B74412D37EC400DA6239 /* makegroupcommand.h */, @@ -1821,8 +1831,6 @@ A7E9B68F12D37EC400DA6239 /* classify.h */, A7E9B73812D37EC400DA6239 /* knn.h */, A7E9B73712D37EC400DA6239 /* knn.cpp */, - A7E9B78912D37EC400DA6239 /* phylodiversity.cpp */, - A7E9B78A12D37EC400DA6239 /* phylodiversity.h */, A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */, A7E9B78E12D37EC400DA6239 /* phylosummary.h */, A7E9B78F12D37EC400DA6239 /* phylotree.cpp */, @@ -1874,6 +1882,8 @@ A713EBAB12DC7613000092AC /* readphylipvector.cpp */, A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */, A7E9B84412D37EC400DA6239 /* splitmatrix.h */, + A7D755D71535F665009BF21A /* treereader.h */, + A7D755D91535F679009BF21A /* treereader.cpp */, ); name = read; sourceTree = ""; @@ -1928,10 +1938,11 @@ 08FB7793FE84155DC02AAC07 /* Project object */ = { isa = PBXProject; attributes = { + LastUpgradeCheck = 0420; ORGANIZATIONNAME = "Schloss Lab"; }; buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */; - compatibilityVersion = "Xcode 3.1"; + compatibilityVersion = "Xcode 3.2"; developmentRegion = English; hasScannedForEncodings = 1; knownRegions = ( @@ -1968,7 +1979,6 @@ A7E9B88C12D37EC400DA6239 /* blastdb.cpp in Sources */, A7E9B88D12D37EC400DA6239 /* boneh.cpp in Sources */, A7E9B88E12D37EC400DA6239 /* bootstrap.cpp in Sources */, - A7E9B88F12D37EC400DA6239 /* bootstrapsharedcommand.cpp in Sources */, A7E9B89012D37EC400DA6239 /* bstick.cpp in Sources */, A7E9B89112D37EC400DA6239 /* calculator.cpp in Sources */, A7E9B89212D37EC400DA6239 /* canberra.cpp in Sources */, @@ -2003,7 +2013,7 @@ A7E9B8B012D37EC400DA6239 /* commandfactory.cpp in Sources */, A7E9B8B112D37EC400DA6239 /* commandoptionparser.cpp in Sources */, A7E9B8B212D37EC400DA6239 /* completelinkage.cpp in Sources */, - A7E9B8B312D37EC400DA6239 /* consensuscommand.cpp in Sources */, + A7E9B8B312D37EC400DA6239 /* consensus.cpp in Sources */, A7E9B8B412D37EC400DA6239 /* consensusseqscommand.cpp in Sources */, A7E9B8B512D37EC400DA6239 /* corraxescommand.cpp in Sources */, A7E9B8B612D37EC400DA6239 /* coverage.cpp in Sources */, @@ -2099,7 +2109,6 @@ A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */, A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */, A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */, - A7E9B91612D37EC400DA6239 /* phylodiversity.cpp in Sources */, A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */, A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */, A7E9B91912D37EC400DA6239 /* phylotree.cpp in Sources */, @@ -2295,6 +2304,10 @@ A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */, A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */, A76CDD821510F143004C8458 /* prcseqscommand.cpp in Sources */, + A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */, + A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */, + A7D755DA1535F679009BF21A /* treereader.cpp in Sources */, + A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2307,7 +2320,6 @@ ALWAYS_SEARCH_USER_PATHS = NO; COPY_PHASE_STRIP = NO; GCC_DYNAMIC_NO_PIC = NO; - GCC_ENABLE_FIX_AND_CONTINUE = YES; GCC_MODEL_TUNING = G5; GCC_OPTIMIZATION_LEVEL = 0; INSTALL_PATH = /usr/local/bin; @@ -2361,7 +2373,6 @@ "-lncurses", "-lreadline", ); - PREBINDING = NO; SDKROOT = macosx10.6; USER_HEADER_SEARCH_PATHS = ""; }; @@ -2399,7 +2410,6 @@ "-lncurses", "-lreadline", ); - PREBINDING = NO; SDKROOT = macosx10.6; }; name = Release;