X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=112cf3c7fdc7305c62bce17667f81232492860f6;hb=fa08e82ec2dd48f73d051c210dad54a403308949;hp=2f3cc5520b1b3454081b9db51fe4d75662070c18;hpb=0adea182fc7adb2d83492ac2c065fb30e0054e41;p=mothur.git

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 2f3cc55..112cf3c 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -7,6 +7,7 @@
 	objects = {
 
 /* Begin PBXBuildFile section */
+		7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; };
 		8DD76FB00486AB0100D96B5E /* mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6A0FF2C0290799A04C91782 /* mothur.1 */; };
 		A70332B712D3A13400761E33 /* makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* makefile */; };
 		A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
@@ -302,6 +303,8 @@
 /* End PBXCopyFilesBuildPhase section */
 
 /* Begin PBXFileReference section */
+		7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = refchimeratest.h; sourceTree = "<group>"; };
+		7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = refchimeratest.cpp; sourceTree = "<group>"; };
 		8DD76FB20486AB0100D96B5E /* Mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = Mothur; sourceTree = BUILT_PRODUCTS_DIR; };
 		A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = "<group>"; };
 		A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylipvector.h; sourceTree = "<group>"; };
@@ -1011,6 +1014,8 @@
 		A7E9BA3812D3956100DA6239 /* commands */ = {
 			isa = PBXGroup;
 			children = (
+				7E6BE10812F710D8007ADDBE /* refchimeratest.h */,
+				7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */,
 				A7E9B6AE12D37EC400DA6239 /* command.hpp */,
 				A7E9B65112D37EC300DA6239 /* aligncommand.cpp */,
 				A7E9B65212D37EC300DA6239 /* aligncommand.h */,
@@ -1593,7 +1598,7 @@
 			attributes = {
 				ORGANIZATIONNAME = "Schloss Lab";
 			};
-			buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "mothur" */;
+			buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
 			compatibilityVersion = "Xcode 3.1";
 			developmentRegion = English;
 			hasScannedForEncodings = 1;
@@ -1895,6 +1900,7 @@
 				A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */,
 				A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */,
 				A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */,
+				7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
@@ -1934,7 +1940,7 @@
 				ARCHS = "$(ARCHS_STANDARD_32_64_BIT)";
 				DEPLOYMENT_LOCATION = NO;
 				GCC_C_LANGUAGE_STANDARD = gnu99;
-				GCC_OPTIMIZATION_LEVEL = 0;
+				GCC_OPTIMIZATION_LEVEL = 3;
 				GCC_PREPROCESSOR_DEFINITIONS = (
 					"MOTHUR_FILES=\"\\\"../release\\\"\"",
 					"VERSION=\"\\\"1.16.0\\\"\"",
@@ -1944,6 +1950,7 @@
 				GCC_WARN_ABOUT_RETURN_TYPE = YES;
 				GCC_WARN_UNUSED_VARIABLE = YES;
 				INSTALL_PATH = "";
+				MACH_O_TYPE = mh_execute;
 				ONLY_ACTIVE_ARCH = YES;
 				OTHER_CPLUSPLUSFLAGS = (
 					"-DUSE_READLINE",
@@ -1965,6 +1972,9 @@
 				ARCHS = "$(ARCHS_STANDARD_32_64_BIT)";
 				DEPLOYMENT_LOCATION = NO;
 				GCC_C_LANGUAGE_STANDARD = gnu99;
+				GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
+				GCC_MODEL_TUNING = "";
+				GCC_OPTIMIZATION_LEVEL = 3;
 				GCC_PREPROCESSOR_DEFINITIONS = (
 					"MOTHUR_FILES=\"\\\"../release\\\"\"",
 					"VERSION=\"\\\"1.15.0\\\"\"",
@@ -1979,6 +1989,7 @@
 				GCC_WARN_UNUSED_VALUE = YES;
 				GCC_WARN_UNUSED_VARIABLE = YES;
 				INSTALL_PATH = "";
+				MACH_O_TYPE = mh_execute;
 				OTHER_CPLUSPLUSFLAGS = (
 					"-DUSE_READLINE",
 					"-DBIT_VERSION",
@@ -2005,7 +2016,7 @@
 			defaultConfigurationIsVisible = 0;
 			defaultConfigurationName = Release;
 		};
-		1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "mothur" */ = {
+		1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
 			isa = XCConfigurationList;
 			buildConfigurations = (
 				1DEB928A08733DD80010E9CD /* Debug */,