X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=104c6d5c12c6e4185823e2d5e833760134f8c16a;hb=c7e8c2d15bd7cedcfdf18675cb0ea1a0dcd0e3c0;hp=b6d221f3ba93e62c67ca7c2fe3f239bf5813758e;hpb=fdfbfe59134dd7dd3e49d90609d129128ba2d370;p=mothur.git

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index b6d221f..104c6d5 100644
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -24,6 +24,7 @@
 		A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */; };
 		A73DDBBA13C4A0D1006AAE38 /* clearmemorycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */; };
 		A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
+		A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
 		A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; };
 		A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; };
 		A74D59A4159A1E2000043046 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; };
@@ -51,6 +52,7 @@
 		A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; };
 		A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */; };
 		A7D755DA1535F679009BF21A /* treereader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D755D91535F679009BF21A /* treereader.cpp */; };
+		A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */; };
 		A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
 		A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
 		A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65312D37EC300DA6239 /* alignment.cpp */; };
@@ -396,6 +398,8 @@
 		A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearmemorycommand.cpp; sourceTree = "<group>"; };
 		A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurmetastats.h; sourceTree = "<group>"; };
 		A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurmetastats.cpp; sourceTree = "<group>"; };
+		A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencecountparser.cpp; sourceTree = "<group>"; };
+		A741FAD415D168A00067BCC5 /* sequencecountparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencecountparser.h; sourceTree = "<group>"; };
 		A74A9A9D148E881E00AB5E3E /* spline.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = spline.h; sourceTree = "<group>"; };
 		A74A9A9E148E881E00AB5E3E /* spline.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = spline.cpp; sourceTree = "<group>"; };
 		A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerauchimecommand.h; sourceTree = "<group>"; };
@@ -453,6 +457,8 @@
 		A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treereader.h; sourceTree = "<group>"; };
 		A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treereader.cpp; sourceTree = "<group>"; };
 		A7DAAFA3133A254E003956EB /* commandparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = commandparameter.h; sourceTree = "<group>"; };
+		A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsedistancematrix.cpp; sourceTree = "<group>"; };
+		A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sparsedistancematrix.h; sourceTree = "<group>"; };
 		A7E9B64F12D37EC300DA6239 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
 		A7E9B65012D37EC300DA6239 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
 		A7E9B65112D37EC300DA6239 /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = "<group>"; };
@@ -1656,6 +1662,8 @@
 				A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */,
 				A7E9B7DB12D37EC400DA6239 /* sequence.cpp */,
 				A7E9B7DC12D37EC400DA6239 /* sequence.hpp */,
+				A741FAD415D168A00067BCC5 /* sequencecountparser.h */,
+				A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */,
 				A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */,
 				A7E9B7DE12D37EC400DA6239 /* sequencedb.h */,
 				A7F9F5CD141A5E500032F693 /* sequenceparser.h */,
@@ -1672,6 +1680,8 @@
 				A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */,
 				A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */,
 				A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */,
+				A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */,
+				A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */,
 				A7E9B85112D37EC400DA6239 /* suffixdb.cpp */,
 				A7E9B85212D37EC400DA6239 /* suffixdb.hpp */,
 				A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */,
@@ -2186,6 +2196,8 @@
 				A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */,
 				A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */,
 				A74D59A4159A1E2000043046 /* counttable.cpp in Sources */,
+				A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */,
+				A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */,
 			);
 			runOnlyForDeploymentPostprocessing = 0;
 		};
@@ -2232,8 +2244,8 @@
 				GCC_OPTIMIZATION_LEVEL = 0;
 				GCC_PREPROCESSOR_DEFINITIONS = (
 					"MOTHUR_FILES=\"\\\"../release\\\"\"",
-					"VERSION=\"\\\"1.25.0\\\"\"",
-					"RELEASE_DATE=\"\\\"5/01/2012\\\"\"",
+					"VERSION=\"\\\"1.26.0\\\"\"",
+					"RELEASE_DATE=\"\\\"7/9/2012\\\"\"",
 				);
 				"GCC_VERSION[arch=*]" = "";
 				GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
@@ -2268,8 +2280,8 @@
 				GCC_MODEL_TUNING = "";
 				GCC_OPTIMIZATION_LEVEL = 0;
 				GCC_PREPROCESSOR_DEFINITIONS = (
-					"VERSION=\"\\\"1.25.0\\\"\"",
-					"RELEASE_DATE=\"\\\"4/30/2012\\\"\"",
+					"VERSION=\"\\\"1.26.0\\\"\"",
+					"RELEASE_DATE=\"\\\"7/9/2012\\\"\"",
 				);
 				GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
 				GCC_WARN_ABOUT_RETURN_TYPE = YES;