X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=104c6d5c12c6e4185823e2d5e833760134f8c16a;hb=c7e8c2d15bd7cedcfdf18675cb0ea1a0dcd0e3c0;hp=4553219568d78e02ea441d05a475b063419a95b8;hpb=42d411d3362186465347aeabdd3155bd3259671e;p=mothur.git diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 4553219..104c6d5 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -8,9 +8,11 @@ /* Begin PBXBuildFile section */ 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; - 219C1DE41559BCCF004209F9 /* getcoremicrobiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomcommand.cpp */; }; + 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; 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name = Products; sourceTree = ""; @@ -1255,8 +1270,8 @@ A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */, A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */, A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */, - 219C1DE51559BCF2004209F9 /* getcoremicrobiomcommand.h */, - 219C1DE31559BCCD004209F9 /* getcoremicrobiomcommand.cpp */, + 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */, + 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */, A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */, A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */, A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */, @@ -1265,6 +1280,8 @@ A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */, A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */, A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, + A70056E8156A93E300924A2D /* getotulabelscommand.h */, + A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */, A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */, @@ -1297,12 +1314,18 @@ A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */, A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */, A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */, + A7A0671C156294810095C8C5 /* listotulabelscommand.h */, + A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */, A7E9B73E12D37EC400DA6239 /* listseqscommand.h */, A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */, + A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */, + A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */, A7FA10001302E096003860FE /* mantelcommand.h */, A7FA10011302E096003860FE /* mantelcommand.cpp */, A724D2B4153C8600000A826F /* makebiomcommand.h */, A724D2B6153C8628000A826F /* makebiomcommand.cpp */, + A7A0671D1562AC230095C8C5 /* makecontigscommand.h */, + A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */, A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */, A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */, A7E9B74412D37EC400DA6239 /* makegroupcommand.h */, @@ -1355,18 +1378,14 @@ A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */, A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */, A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */, - A7E9B7B712D37EC400DA6239 /* readdistcommand.h */, - A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */, - A7E9B7BC12D37EC400DA6239 /* readotucommand.h */, - A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */, - A7E9B7C212D37EC400DA6239 /* readtreecommand.h */, - A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */, A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */, A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */, A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */, A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */, A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */, A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */, + A70056E9156AB6D400924A2D /* removeotulabelscommand.h */, + A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */, A727864212E9E28C00F86ABA /* removerarecommand.h */, A727864312E9E28C00F86ABA /* removerarecommand.cpp */, A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */, @@ -1606,10 +1625,12 @@ A7E9B66312D37EC400DA6239 /* blastalign.hpp */, A7E9B66412D37EC400DA6239 /* blastdb.cpp */, A7E9B66512D37EC400DA6239 /* blastdb.hpp */, + A74D59A6159A1E3600043046 /* counttable.h */, + A74D59A3159A1E2000043046 /* counttable.cpp */, + A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, - A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, A7E9B6DF12D37EC400DA6239 /* fastamap.h */, @@ -1641,6 +1662,8 @@ A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */, A7E9B7DB12D37EC400DA6239 /* sequence.cpp */, A7E9B7DC12D37EC400DA6239 /* sequence.hpp */, + A741FAD415D168A00067BCC5 /* sequencecountparser.h */, + A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */, A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */, A7E9B7DE12D37EC400DA6239 /* sequencedb.h */, A7F9F5CD141A5E500032F693 /* sequenceparser.h */, @@ -1657,6 +1680,8 @@ A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */, A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */, A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */, + A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */, + A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */, A7E9B85112D37EC400DA6239 /* suffixdb.cpp */, A7E9B85212D37EC400DA6239 /* suffixdb.hpp */, A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */, @@ -1809,7 +1834,7 @@ name = Mothur; productInstallPath = "$(HOME)/bin"; productName = mothur; - productReference = 8DD76FB20486AB0100D96B5E /* Mothur */; + productReference = 8DD76FB20486AB0100D96B5E /* mothur */; productType = "com.apple.product-type.tool"; }; /* End PBXNativeTarget section */ @@ -2010,11 +2035,8 @@ A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */, A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */, A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */, - A7E9B92C12D37EC400DA6239 /* readdistcommand.cpp in Sources */, - A7E9B92E12D37EC400DA6239 /* readotucommand.cpp in Sources */, A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */, A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */, - A7E9B93112D37EC400DA6239 /* readtreecommand.cpp in Sources */, A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */, A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */, A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */, @@ -2167,7 +2189,15 @@ A7D755DA1535F679009BF21A /* treereader.cpp in Sources */, A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */, 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */, - 219C1DE41559BCCF004209F9 /* getcoremicrobiomcommand.cpp in Sources */, + 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */, + A7A0671A1562946F0095C8C5 /* listotulabelscommand.cpp in Sources */, + A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */, + A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */, + A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */, + A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */, + A74D59A4159A1E2000043046 /* counttable.cpp in Sources */, + A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */, + A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2178,17 +2208,14 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = NO; - CONFIGURATION_TEMP_DIR = /Users/johnwestcott/desktop/debug; COPY_PHASE_STRIP = NO; DEPLOYMENT_LOCATION = YES; GCC_DYNAMIC_NO_PIC = NO; GCC_MODEL_TUNING = G5; GCC_OPTIMIZATION_LEVEL = 0; - INSTALL_PATH = /Users/johnwestcott/desktop/debug; - OBJROOT = /Users/johnwestcott/desktop/debug; - PRODUCT_NAME = Mothur; + PRODUCT_NAME = mothur; SDKROOT = macosx10.6; - SYMROOT = /Users/johnwestcott/desktop/debug; + SKIP_INSTALL = NO; }; name = Debug; }; @@ -2196,15 +2223,12 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = NO; - CONFIGURATION_TEMP_DIR = /Users/johnwestcott/desktop/debug; DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; DEPLOYMENT_LOCATION = YES; GCC_MODEL_TUNING = G5; GCC_WARN_UNUSED_VALUE = YES; - INSTALL_PATH = /Users/johnwestcott/desktop/debug; - OBJROOT = /Users/johnwestcott/desktop/debug; - PRODUCT_NAME = Mothur; - SYMROOT = /Users/johnwestcott/desktop/debug; + PRODUCT_NAME = mothur; + SKIP_INSTALL = NO; }; name = Release; }; @@ -2220,15 +2244,15 @@ GCC_OPTIMIZATION_LEVEL = 0; GCC_PREPROCESSOR_DEFINITIONS = ( "MOTHUR_FILES=\"\\\"../release\\\"\"", - "VERSION=\"\\\"1.24.0\\\"\"", - "RELEASE_DATE=\"\\\"3/12/2012\\\"\"", + "VERSION=\"\\\"1.26.0\\\"\"", + "RELEASE_DATE=\"\\\"7/9/2012\\\"\"", ); "GCC_VERSION[arch=*]" = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; HEADER_SEARCH_PATHS = ""; - INSTALL_PATH = ""; + INSTALL_PATH = TARGET_BUILD_DIR; MACH_O_TYPE = mh_execute; ONLY_ACTIVE_ARCH = YES; OTHER_CPLUSPLUSFLAGS = ( @@ -2241,6 +2265,7 @@ "-lreadline", ); SDKROOT = macosx10.6; + SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = ""; }; name = Debug; @@ -2255,8 +2280,8 @@ GCC_MODEL_TUNING = ""; GCC_OPTIMIZATION_LEVEL = 0; GCC_PREPROCESSOR_DEFINITIONS = ( - "VERSION=\"\\\"1.25.0\\\"\"", - "RELEASE_DATE=\"\\\"4/30/2012\\\"\"", + "VERSION=\"\\\"1.26.0\\\"\"", + "RELEASE_DATE=\"\\\"7/9/2012\\\"\"", ); GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; @@ -2266,7 +2291,7 @@ GCC_WARN_UNUSED_PARAMETER = YES; GCC_WARN_UNUSED_VALUE = YES; GCC_WARN_UNUSED_VARIABLE = YES; - INSTALL_PATH = ""; + INSTALL_PATH = TARGET_BUILD_DIR; MACH_O_TYPE = mh_execute; OTHER_CPLUSPLUSFLAGS = ( "-DUSE_READLINE", @@ -2278,6 +2303,7 @@ "-lreadline", ); SDKROOT = macosx10.6; + SKIP_INSTALL = NO; }; name = Release; };