X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Makefile;h=dbd90af737a7f360df90e110f66a30a915bba435;hb=0ccd9d36ebf35ce620a8248ecf4336c84065e6c0;hp=0d3eb4cde7ca8c894dc2bbe01c70284d09ede3e1;hpb=d46afb500a437323dda82920f9fb18324b2dbec0;p=samtools.git

diff --git a/Makefile b/Makefile
index 0d3eb4c..dbd90af 100644
--- a/Makefile
+++ b/Makefile
@@ -9,7 +9,7 @@ LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
 AOBJS=		bam_tview.o bam_plcmd.o sam_view.o \
 			bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
 			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-			cut_target.o phase.o bam2depth.o padding.o
+			cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o
 PROG=		samtools
 INCLUDES=	-I.
 SUBDIRS=	. bcftools misc
@@ -51,7 +51,7 @@ razip:razip.o razf.o $(KNETFILE_O)
 bgzip:bgzip.o bgzf.o $(KNETFILE_O)
 		$(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz -lpthread
 
-bgzf.o:bgzf.h
+bgzf.o:bgzf.c bgzf.h
 		$(CC) -c $(CFLAGS) $(DFLAGS) -DBGZF_CACHE $(INCLUDES) bgzf.c -o $@
 
 razip.o:razf.h