X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Makefile;h=99f7ecaf454c8bda2ee632d6529e6538e2608c31;hb=df50415f5380510f5b44bee2361413fc39c8bbcf;hp=1b03921f940398dbf104522391595351ce67c8eb;hpb=c350a570e955d5b4c2c13f607b7442df6d332c67;p=samtools.git diff --git a/Makefile b/Makefile index 1b03921..99f7eca 100644 --- a/Makefile +++ b/Makefile @@ -8,7 +8,7 @@ LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \ AOBJS= bam_tview.o bam_plcmd.o sam_view.o \ bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \ bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \ - cut_target.o phase.o bam2depth.o + cut_target.o phase.o bam2depth.o padding.o PROG= samtools INCLUDES= -I. SUBDIRS= . bcftools misc @@ -38,7 +38,7 @@ all:$(PROG) lib:libbam.a libbam.a:$(LOBJS) - $(AR) -cru $@ $(LOBJS) + $(AR) -csru $@ $(LOBJS) samtools:lib-recur $(AOBJS) $(CC) $(CFLAGS) -o $@ $(AOBJS) -Lbcftools $(LIBPATH) libbam.a -lbcf $(LIBCURSES) -lm -lz