X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Makefile;h=80f7a31b94f5d2a30909a0cac65a3db8c0f8462f;hb=7251efa37992752a8cf62ff363da0ad5099937bd;hp=e28822eabfa7499e5cb8d5a1a5198360e73630ee;hpb=205b696ea778f5b7cfe70e5531bfe6583b5af333;p=samtools.git

diff --git a/Makefile b/Makefile
index e28822e..80f7a31 100644
--- a/Makefile
+++ b/Makefile
@@ -7,7 +7,8 @@ LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
 			$(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o kprobaln.o
 AOBJS=		bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o	\
 			bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o	\
-			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o
+			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
+			cut_target.o phase.o
 PROG=		samtools
 INCLUDES=	-I.
 SUBDIRS=	. bcftools misc
@@ -66,6 +67,7 @@ bcf.o:bcftools/bcf.h
 bam2bcf.o:bam2bcf.h errmod.h bcftools/bcf.h
 bam2bcf_indel.o:bam2bcf.h
 errmod.o:errmod.h
+phase.o:bam.h khash.h ksort.h
 
 faidx.o:faidx.h razf.h khash.h
 faidx_main.o:faidx.h razf.h