X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Makefile;h=1dc3f7b1b1ed51862f08967e947e2bfc38eededf;hb=c98f4ce3c7c19af972f58eaf0053b94ba9413c81;hp=01405cac91aeb0adf9ce1fabb291bdc111ab3979;hpb=a00339bed19ef587e28e9391cf21a63266fea66e;p=bamtools.git

diff --git a/Makefile b/Makefile
index 01405ca..1dc3f7b 100644
--- a/Makefile
+++ b/Makefile
@@ -1,31 +1,48 @@
-CXX=		g++
-CXXFLAGS=	-Wall -O3 -D_FILE_OFFSET_BITS=64
-PROG= 		bamtools
-API=		BGZF.o \
-		BamIndex.o \
-		BamReader.o \
-		BamWriter.o \
-		BamMultiReader.o
-UTILS=		bamtools_options.o \
-		bamtools_utilities.o
-TOOLKIT=	bamtools_convert.o \
-		bamtools_count.o \
-		bamtools_coverage.o \
-		bamtools_filter.o \
-		bamtools_header.o \
-		bamtools_index.o \
-		bamtools_merge.o \
-		bamtools_sam.o \
-		bamtools_sort.o \
-		bamtools_stats.o
-MAIN=		bamtools.o
-OBJS=		$(API) $(UTILS) $(TOOLKIT) $(MAIN)
-LIBS=		-lz
-
-all: $(PROG)
-
-bamtools: $(OBJS)
-	$(CXX) $(CXXFLAGS) -o $@ $(OBJS) $(LIBS)
-
-clean:
-	rm -fr gmon.out *.o *.a a.out *~
+# ==========================
+# BamTools Makefile
+# (c) 2010 Derek Barnett
+#
+# top-level
+# ==========================
+
+# define main directories
+export OBJ_DIR  = obj
+export BIN_DIR  = bin
+export SRC_DIR  = src
+
+# define compile/link flags
+export CXX      = g++
+export CXXFLAGS = -Wall -O3 -D_FILE_OFFSET_BITS=64
+export LIBS     = -lz
+
+# define current BamTools version
+export BAMTOOLS_VERSION = 0.7.0812
+
+# define source subdirectories
+SUBDIRS = $(SRC_DIR)/api \
+          $(SRC_DIR)/utils \
+          $(SRC_DIR)/third_party \
+          $(SRC_DIR)/toolkit 
+
+all:
+	@echo "Building BamTools:"
+	@echo "Version: $$BAMTOOLS_VERSION"
+	@echo "========================================================="
+	@echo ""
+	@echo "- Creating target directories"
+	@mkdir -p $(BIN_DIR)
+	@mkdir -p $(OBJ_DIR)
+	@echo ""
+	@for dir in $(SUBDIRS); do \
+		echo "- Building in $$dir"; \
+		$(MAKE) --no-print-directory -C $$dir; \
+		echo ""; \
+	done
+
+.PHONY: all
+
+clean:
+	@echo "Cleaning up."
+	@rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
+
+.PHONY: clean