X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=Makefile;h=1dc3f7b1b1ed51862f08967e947e2bfc38eededf;hb=7eee95124eb52bee48d75bbbfc5ab5f2720bfe63;hp=8862226d50cf01812083549ca1d71f41dc29cde0;hpb=bcddc83db58c2da241c1e81be260609cdbe36bc6;p=bamtools.git

diff --git a/Makefile b/Makefile
index 8862226..1dc3f7b 100644
--- a/Makefile
+++ b/Makefile
@@ -1,39 +1,48 @@
-CC=		gcc
-CXX=		g++
-CFLAGS=		-Wall -O3
-CXXFLAGS=	$(CFLAGS)
-DFLAGS=		-D_IOLIB=2 #-D_NDEBUG
-OBJS=		BamReader.o bgzf.o
-PROG=		BamReaderTest
-INCLUDES=       
-ARFLAGS=	-crs
-LIBS=		-lz
-SUBDIRS=	.
-
-.SUFFIXES:.c .cpp .o
-
-.c.o:
-		$(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
-
-.cpp.o:
-		$(CXX) -c $(CXXFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
-
-all: $(PROG) BamConversion
-
-lib:libbambc.a
-
-libbambc.a:$(OBJS)
-		$(AR) $(ARFLAGS) $@ $(OBJS)
-
-BamReaderTest:lib BamReaderMain.o
-		$(CXX) $(CXXFLAGS) -o $@ BamReaderMain.o $(LIBS) -L. -lbambc
-
-BamConversion: lib BamWriter.o BamConversionMain.o
-	$(CXX) $(CXXFLAGS) -o $@ BamWriter.o BamConversionMain.o $(LIBS) -L. -lbambc
-
-BamMerge: lib BamMerge.o
-		$(CXX) $(CXXFLAGS) -o $@ BamWriter.o BamMerge.o $(LIBS) -L. -lbambc
-
-
-clean:
-		rm -fr gmon.out *.o *.a a.out $(PROG) BamConversion *~
+# ==========================
+# BamTools Makefile
+# (c) 2010 Derek Barnett
+#
+# top-level
+# ==========================
+
+# define main directories
+export OBJ_DIR  = obj
+export BIN_DIR  = bin
+export SRC_DIR  = src
+
+# define compile/link flags
+export CXX      = g++
+export CXXFLAGS = -Wall -O3 -D_FILE_OFFSET_BITS=64
+export LIBS     = -lz
+
+# define current BamTools version
+export BAMTOOLS_VERSION = 0.7.0812
+
+# define source subdirectories
+SUBDIRS = $(SRC_DIR)/api \
+          $(SRC_DIR)/utils \
+          $(SRC_DIR)/third_party \
+          $(SRC_DIR)/toolkit 
+
+all:
+	@echo "Building BamTools:"
+	@echo "Version: $$BAMTOOLS_VERSION"
+	@echo "========================================================="
+	@echo ""
+	@echo "- Creating target directories"
+	@mkdir -p $(BIN_DIR)
+	@mkdir -p $(OBJ_DIR)
+	@echo ""
+	@for dir in $(SUBDIRS); do \
+		echo "- Building in $$dir"; \
+		$(MAKE) --no-print-directory -C $$dir; \
+		echo ""; \
+	done
+
+.PHONY: all
+
+clean:
+	@echo "Cleaning up."
+	@rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
+
+.PHONY: clean