X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=INSTALL;h=f1cf7aa4079ca1302608dd81c59a7882597975ee;hb=6f1c7227019c299bd9df4c4187ca29e0baad1c4b;hp=f202463b76f788401442d6f9fb29d7ea7a5e429d;hpb=6fe3ffa44a450bd83f6df6b6ca4a200b97a47936;p=samtools.git diff --git a/INSTALL b/INSTALL index f202463..f1cf7aa 100644 --- a/INSTALL +++ b/INSTALL @@ -1,19 +1,24 @@ System Requirements =================== -Most of SAMtools functionality only depends on zlib which is included in -this source code package. Compiling the alignment viewer further -requires the GNU ncurses library , -which comes with Mac OS X and most of the modern Linux/Unix -distributions. If you do not have this library installed, you can still -compile the rest of SAMtools by manually modifying two lines in Makefile -as is described in the Makefile. +SAMtools depends on the zlib library . The latest +version 1.2.3 is preferred and with the latest version you can compile +razip and use it to compress a FASTA file. SAMtools' faidx is able to +index a razip-compressed FASTA file to save diskspace. Older zlib also +works with SAMtools, but razip cannot be compiled. + +The text-based viewer (tview) requires the GNU ncurses library +, which comes with Mac OS X and +most of the modern Linux/Unix distributions. If you do not have this +library installed, you can still compile the rest of SAMtools by +manually modifying one line in Makefile. Compilation =========== -Type `make' to compile samtools. +Type `make' to compile samtools. If you have zlib >= 1.2.2.1, you can +compile razip with `make razip'. Installation