X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=ChangeLog;h=94d9816f25afd2f3ca0a76b58d2918b99f01788e;hb=a564594163cc7e6ec5b0fbfee97608df22b46aca;hp=69c19c3a7f200c10591a523c3c074b532b64437d;hpb=f71a875dd49951d5c72f55b8578b52cdaf23f956;p=ape.git diff --git a/ChangeLog b/ChangeLog index 69c19c3..94d9816 100644 --- a/ChangeLog +++ b/ChangeLog @@ -3,6 +3,10 @@ NEW FEATURES + o Two new functions, pic.ortho and varCompPhylip, implements the + orthonormal contrasts of Felsenstein (2008, Am Nat, 171:713). The + second function requires Phylip to be installed on the computer. + o bd.ext() has a new option conditional = TRUE to use probabilities conditioned on no extinction for the taxonomic data. @@ -11,6 +15,9 @@ BUG FIXES o write.tree() failed to output correctly tree names. + o dist.nodes() returned duplicated column(s) with unrooted and/or + multichotomous trees. + CHANGES IN APE VERSION 2.6-1