X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=ChangeLog;h=50d75d73f9b7a4fac1710b6c1ecd248d6474bf1c;hb=2741f6e9f61e33c7b499f27c47604606d08f4bea;hp=abb26160fda15c623d83ff7f149271973307cf58;hpb=f91082164111e17be175283d9fe8335e89424d42;p=ape.git diff --git a/ChangeLog b/ChangeLog index abb2616..50d75d7 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,24 @@ + CHANGES IN APE VERSION 2.6-1 + + +NEW FEATURES + + o The new speciesTree calculates the species tree from a set of gene + trees. Several methods are available including maximum tree and + shallowest divergence tree. + + +BUG FIXES + + o A bug introduced in write.tree() with ape 2.6 has been fixed. + + o as.list.DNAbin() did not work correctly with vectors. + + o as.hclust.phylo() failed with trees with node labels (thanks to + Filipe Vieira for the fix). + + + CHANGES IN APE VERSION 2.6 @@ -57,6 +78,9 @@ OTHER CHANGES o pic() now returns a vector with the node labels of the tree (if available) as names. + o write.tree() and read.tree() have been substantially improved thanks + to contributions by Klaus Schliep. + CHANGES IN APE VERSION 2.5-3